Publications
Refereed
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SimInf: An R package for data-driven stochastic disease spread simulations
. In Journal of Statistical Software, volume 91, number 12, pp 1-42, 2019. (DOI
, Fulltext
).
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Exposing inter-process information for efficient PDES of spatial stochastic systems on multicores
. In ACM Transactions on Modeling and Computer Simulation, volume 29, number 2, pp 11:1-25, 2019. (DOI
).
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Ventral hippocampal OLM cells control type 2 theta oscillations and response to predator odor
. In Nature Communications, volume 9, pp 3638:1-15, 2018. (DOI
, Fulltext
).
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Multiscale modelling via split-step methods in neural firing
. In Mathematical and Computer Modelling of Dynamical Systems, volume 24, pp 426-445, 2018. (DOI
, Fulltext
).
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Fine-grained local dynamic load balancing in PDES
. In Proc. 6th ACM SIGSIM Conference on Principles of Advanced Discrete Simulation, pp 201-212, ACM Press, New York, 2018. (DOI
).
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Exposing inter-process information for efficient parallel discrete event simulation of spatial stochastic systems
. In Proc. 5th ACM SIGSIM Conference on Principles of Advanced Discrete Simulation, pp 53-64, ACM Press, New York, 2017. (DOI
).
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Data-driven network modelling of disease transmission using complete population movement data: spread of VTEC O157 in Swedish cattle
. In Veterinary research (Print), volume 47, pp 81:1-17, 2016. (DOI
, Fulltext
).
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Fast event-based epidemiological simulations on national scales
. In The international journal of high performance computing applications, volume 30, pp 438-453, 2016. (DOI
, Fulltext
).
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Stochastic focusing coupled with negative feedback enables robust regulation in biochemical reaction networks
. In Journal of the Royal Society Interface, volume 12, number 113, pp 20150831:1-10, 2015. (DOI
, fulltext:postprint
).
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Efficient inter-process synchronization for parallel discrete event simulation on multicores
. In Proc. 3rd ACM SIGSIM Conference on Principles of Advanced Discrete Simulation, pp 183-194, ACM Press, New York, 2015. (DOI
).
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Sensitivity estimation and inverse problems in spatial stochastic models of chemical kinetics
. In Numerical Mathematics and Advanced Applications: ENUMATH 2013, volume 103 of Lecture Notes in Computational Science and Engineering, pp 519-527, Springer, 2015. (DOI
).
Other
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Parallelism in Event-Based Computations with Applications in Biology
. Ph.D. thesis, Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology nr 1586, Acta Universitatis Upsaliensis, Uppsala, 2017. (fulltext
, preview image
).
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Parallelism and efficiency in discrete-event simulation
. Licentiate thesis, IT licentiate theses / Uppsala University, Department of Information Technology nr 2015-004, Uppsala University, 2015. (fulltext
).
Teaching
- Scientific Computing II
(2015)
- Scientific Computing II
(2014)
- High Performance Computing
(2013)