@TechReport{	  it:2012-036,
  author	= {Pavol Bauer and Brian Drawert and Stefan Engblom and
		  Andreas Hellander},
  title		= {URDME v. 1.2: User's manual},
  institution	= {Department of Information Technology, Uppsala University},
  department	= {Division of Scientific Computing},
  year		= {2012},
  number	= {2012-036},
  month		= dec,
  note		= {Also available at \url{http://arxiv.org/abs/0902.2912}},
  abstract	= {We have developed URDME, a general software for simulation
		  of stochastic reaction-diffusion processes on unstructured
		  meshes. This allows for a more flexible handling of
		  complicated geometries and curved boundaries compared to
		  simulations on structured, cartesian meshes. The underlying
		  algorithm is the next subvolume method, extended to
		  unstructured meshes by obtaining jump coefficients from a
		  finite element formulation of the corresponding macroscopic
		  equation. This manual describes version 1.2 of the
		  software. URDME 1.2 includes support for Comsol
		  Multiphysics 4.1, 4.2, 4.3 as well as the previous version
		  3.5a. Additionally, support for basic SBML has been added
		  along with the possibility to compile in stand-alone
		  mode.}
}