Division of Scientific Computing

2023

1. Service-based Federated Deep Reinforcement Learning for Anomaly Detection in Fog Ecosystems. Mays AL-Naday, Martin Reed, Vlad Dobre, Salman Toor, Bruno Volckaert, and Filip De Turck. In 2023 26th Conference on Innovation in Clouds, Internet and Networks and Workshops (ICIN), International Conference on Intelligence in Next Generation Networks, pp 121-128, Institute of Electrical and Electronics Engineers (IEEE), 2023. (DOI).
2. AN ELLIPTIC LOCAL PROBLEM WITH EXPONENTIAL DECAY OF THE RESONANCE ERROR FOR NUMERICAL HOMOGENIZATION. Assyr Abdulle, Doghonay Arjmand, and Edoardo Paganoni. In Multiscale Modeling & simulation, volume 21, number 2, pp 513-541, Society for Industrial & Applied Mathematics (SIAM), 2023. (DOI).
3. Generalized Locally Toeplitz matrix-sequences and approximated PDEs on submanifolds: the flat case. Andrea Adriani, Matteo Semplice, and Stefano Serra. In Linear and multilinear algebra, pp 1-23, Informa UK Limited, 2023. (DOI, External link).
4. Recognizing seizure using Poincaré plot of EEG signals and graphical features in DWT domain. Hesam Akbari, Muhammad Tariq Sadiq, Nastaran Jafari, Jingwei Too, Nasser Mikaeilvand, Antonio Cicone, and Stefano Serra-Capizzano. In Bratislava Medical Journal, volume 124, number 1, pp 12-24, AEPress, 2023. (DOI).
5. Selection of human evaluators for design smell detection using dragonfly optimization algorithm: An empirical study. Sultan M. Al Khatib, Khalid Alkharabsheh, and Sadi Alawadi. In Information and Software Technology, volume 155, Elsevier, 2023. (DOI, Fulltext, fulltext:print).
6. Achieving improved accuracy for imputation of ancient DNA. Kristiina Ausmees and Carl Nettelblad. In Bioinformatics, volume 39, number 1, Oxford University Press, 2023. (DOI, Fulltext, fulltext:print).
7. Modeling and inversion in acoustic-elastic coupled media using energy-stable summation-by-parts operators. Milad Bader, Martin Almquist, and Eric M. Dunham. In Geophysics, volume 88, number 3, pp T137-T150, Society of Exploration Geophysicists, 2023. (DOI).
8. A note on the spectral analysis of matrix sequences via GLT momentary symbols: from all-at-once solution of parabolic problems to distributed fractional order matrices. Matthias Bolten, Sven-Erik Ekström, Isabella Furci, and Stefano Serra-Capizzano. In Electronic Transactions on Numerical Analysis, volume 58, pp 136-163, Osterreichische Akademie der Wissenschaften, Verlag, 2023. (DOI, Fulltext, fulltext:print).
9. Waveform Inversion with a Data Driven Estimate of the Internal Wave. Liliana Borcea, Josselin Garnier, Alexander V. Mamonov, and Jörn Zimmerling. In SIAM Journal on Imaging Sciences, volume 16, number 1, pp 280-312, Society for Industrial and Applied Mathematics, 2023. (DOI).
10. Waveform inversion via reduced order modeling. Liliana Borcea, Josselin Garnier, Alexander V. Mamonov, and Jörn Zimmerling. In Geophysics, volume 88, number 2, pp R175-R191, Society of Exploration Geophysicists, 2023. (DOI).
11. Bayesian inference in epidemics: linear noise analysis. Samuel Bronstein, Stefan Engblom, and Robin Marin. In Mathematical Biosciences and Engineering, volume 20, number 2, pp 4128-4152, American Institute of Mathematical Sciences, 2023. (DOI, Fulltext, Preprint in arXiv, fulltext:print).
12. Efficient Resource Scheduling for Distributed Infrastructures using Negotiation Capabilities. Junjie Chu, Prashant Singh, and Salman Toor. In 2023 IEEE 16th International Conference on Cloud Computing (CLOUD), IEEE International Conference on Cloud Computing, pp 486-492, Institute of Electrical and Electronics Engineers (IEEE), 2023. (DOI).
13. Spectral and norm estimates for matrix-sequences arising from a finite difference approximation of elliptic operators. Armando Coco, Sven-Erik Ekström, Giovanni Russo, Stefano Serra-Capizzano, and Santina Chiara Stissi. In Linear Algebra and its Applications, volume 667, pp 10-43, Elsevier, 2023. (DOI, Fulltext, fulltext:print).
14. 3D Electromagnetic Modeling and Quality Control of Ultradeep Borehole Azimuthal Resistivity Measurements. Sofia Davydycheva, Carlos Torres-Verdín, Junsheng Hou, Wardana Saputra, Michael Rabinovich, Frank Antonsen, Berit Ensted Danielsen, Vladimir Druskin, and Jörn Zimmerling. In , SPWLA, 2023. (DOI).
15. Preconditioning of discrete state- and control-constrained optimal control convection-diffusion problems. Ivo Dravins and Maya Neytcheva. In Calcolo, volume 60, Springer Nature, 2023. (DOI, fulltext:print).
16. Incorporating Full Elastodynamic Effects and Dipping Fault Geometries in Community Code Verification Exercises for Simulations of Earthquake Sequences and Aseismic Slip (SEAS). Brittany A. Erickson, Junle Jiang, Valere Lambert, Sylvain D. Barbot, Mohamed Abdelmeguid, Martin Almquist, Jean-Paul Ampuero, Ryosuke Ando, Camilla Cattania, Alexandre Chen, Luca Dal Zilio, Shuai Deng, Eric M. Dunham, Ahmed E. Elbanna, Alice-Agnes Gabriel, Tobias W. Harvey, Yihe Huang, Yoshihiro Kaneko, Jeremy E. Kozdon, Nadia Lapusta, Duo Li, Meng Li, Chao Liang, Yajing Liu, So Ozawa, Andrea Perez-Silva, Casper Pranger, Paul Segall, Yudong Sun, Prithvi Thakur, Carsten Uphoff, Ylona van Dinther, and Yuyun Yang. In Bulletin of The Seismological Society of America (BSSA), volume 113, number 2, pp 499-523, SEISMOLOGICAL SOC AMER, 2023. (DOI).
17. Boundary and interface methods for energy stable finite difference discretizations of the dynamic beam equation. Gustav Eriksson, Jonatan Werpers, David Niemelä, Niklas Wik, Valter Zethrin, and Ken Mattsson. In Journal of Computational Physics, volume 476, Elsevier, 2023. (DOI, Fulltext, fulltext:print).
18. Non-conforming Interface Conditions for the Second-Order Wave Equation. Gustav Eriksson. In Journal of Scientific Computing, volume 95, Springer, 2023. (DOI, Fulltext, fulltext:print).
19. ?-Circulant Matrices: A Selection of Modern Applications from Preconditioning of Approximated PDEs to Subdivision Schemes. Rafael Diaz Fuentes, Stefano Serra-Capizzano, and Rosita Luisa Sormani. In Algorithms, volume 16, number 7, MDPI AG, 2023. (DOI, fulltext:print).
20. Lethe-DEM: an open-source parallel discrete element solver with load balancing. Shahab Golshan, Peter Munch, Rene Gassmoeller, Martin Kronbichler, and Bruno Blais. In COMPUTATIONAL PARTICLE MECHANICS, volume 10, number 1, pp 77-96, Springer Nature, 2023. (DOI).
21. On Optimal Convergence Rates for Discrete Minimizers of the Gross-Pitaevskii Energy in Localized Orthogonal Decomposition Spaces. Patrick Henning and Anna Persson. In Multiscale Modeling & simulation, volume 21, number 3, pp 993-1011, Society for Industrial and Applied Mathematics, 2023. (DOI).
22. A preconditioned MINRES method for optimal control of wave equations and its asymptotic spectral distribution theory. Sean Hon, Jiamei Dong, and Stefano Serra. In SIAM Journal on Matrix Analysis and Applications, volume 44, number 4, pp 1477-1509, Society for Industrial and Applied Mathematics, 2023. (DOI).
23. Nonadiabatic wave packet dynamics and predissociation resonances in sodium hydride. Hans O. Karlsson. In Physical Chemistry, Chemical Physics - PCCP, volume 25, number 12, pp 8482-8488, Royal Society of Chemistry, Cambridge, UK, 2023. (DOI, Fulltext, fulltext:print).
24. Scaling of radial basis functions. Elisabeth Larsson and Robert Schaback. In IMA Journal of Numerical Analysis, volume 44, number 2, pp 1130-1152, Oxford University Press, 2023. (DOI).
25. A finite element based Heterogeneous Multiscale Method for the Landau-Lifshitz equation. Lena Leitenmaier and Murtazo Nazarov. In Journal of Computational Physics, volume 486, Elsevier, 2023. (DOI, Fulltext, fulltext:print).
26. A high-order artificial compressibility method based on Taylor series time-stepping for variable density flow. Lukas Lundgren and Murtazo Nazarov. In Journal of Computational and Applied Mathematics, volume 421, Elsevier, 2023. (DOI, Fulltext, fulltext:print).
27. Bayesian Monitoring of COVID-19 in Sweden. Robin Marin, Håkan Runvik, Alexander Medvedev, and Stefan Engblom. In Epidemics, volume 45, Elsevier, 2023. (DOI, Fulltext, Pre-print in arXiv, fulltext:print).
28. Contributions of cell behavior to geometric order in embryonic cartilage. Sonja Mathias, Igor Adameyko, Andreas Hellander, and Jochen Kursawe. In PloS Computational Biology, volume 19, number 11, Public Library of Science (PLoS), 2023. (DOI, Fulltext, fulltext:print).
29. Implicit summation by parts operators for finite difference approximations of first and second derivatives. Ken Mattsson and Ylva Ljungberg Rydin. In Journal of Computational Physics, volume 473, Elsevier, 2023. (DOI, Fulltext, fulltext:print).
30. Explicit implicit domain splitting for two phase flows with phase transition. Sandra May and Ferdinand Thein. In Physics of fluids, volume 35, number 1, American Institute of Physics (AIP), 2023. (DOI).
31. The D-RBF-PU method for solving surface PDEs. Reyhaneh Mir and Davoud Mirzaei. In Journal of Computational Physics, volume 479, Elsevier, 2023. (DOI, Fulltext, fulltext:print).
32. A fault detection method based on partition of unity and kernel approximation. Davoud Mirzaei and Navid Soodbakhsh. In Numerical Algorithms, volume 93, number 4, pp 1759-1794, Springer, 2023. (DOI, Fulltext, fulltext:print).
33. Efficient distributed matrix-free multigrid methods on locally refined meshes for FEM computations. Peter Munch, Timo Heister, Laura Prieto Saavedra, and Martin Kronbichler. In ACM transactions on parallel computing, volume 10, number 1, pp 1-38, Association for Computing Machinery (ACM), 2023. (DOI).
34. Stage-parallel fully implicit Runge-Kutta implementations with optimal multilevel preconditioners at the scaling limit. Peter Munch, Ivo Dravins, Martin Kronbichler, and Maya Neytcheva. In SIAM Journal on Scientific Computing, volume 46, number 2, pp 71-96, 2023. (DOI, Fulltext, External link).
35. Approximation results for Beta Jakimovski-Leviatan type operators via q-analogue. Md. Nasiruzzaman, Mohammed A. O. Tom, Stefano Serra-Capizzano, Nadeem Rao, and Mohammad Ayman-Mursaleen. In Filomat, volume 37, number 24, pp 8389-8404, Faculty of Sciences and Mathematics, University of Nis?, 2023. (DOI, External link).
36. Boundary-optimized summation-by-parts operators for finite difference approximations of second derivatives with variable coefficients. Vidar Stiernström, Martin Almquist, and Ken Mattsson. In Journal of Computational Physics, volume 491, Elsevier, 2023. (DOI, Fulltext, External link, fulltext:print).
37. Simulation of flexural-gravity wave propagation for elastic plates in shallow water using an energy-stable finite difference method with weakly enforced boundary and interface conditions. Nurbek Tazhimbetov, Martin Almquist, Jonatan Werpers, and Eric M. Dunham. In Journal of Computational Physics, volume 493, Elsevier BV, 2023. (DOI).
38. Residual viscosity stabilized RBF-FD methods for solving nonlinear conservation laws. Igor Tominec and Murtazo Nazarov. In Journal of Scientific Computing, volume 94, Springer, 2023. (DOI, Fulltext, fulltext:print).
39. Stabilized cut discontinuous Galerkin methods for advection-reaction problems on surfaces. Tale Bakken Ulfsby, Andre Massing, and Simon Sticko. In Computer Methods in Applied Mechanics and Engineering, volume 413, Elsevier, 2023. (DOI, Fulltext, fulltext:print).
40. A Finite Difference-Discontinuous Galerkin Method for the Wave Equation in Second Order Form. Siyang Wang and Gunilla Kreiss. In SIAM Journal on Numerical Analysis, volume 61, number 4, pp 1962-1988, Society for Industrial and Applied Mathematics, 2023. (DOI).
41. Iterative solution methods for 3D controlled-source electromagnetic forward modelling of geophysical exploration scenarios. Michael Weiss, Maya Neytcheva, and Thomas Kalscheuer. In Computational Geosciences, volume 27, pp 81-102, Springer Nature, 2023. (DOI, Fulltext, fulltext:print).
42. Efficient Hierarchical Storage Management Empowered by Reinforcement Learning. Tianru Zhang, Andreas Hellander, and Salman Toor. In IEEE Transactions on Knowledge and Data Engineering, volume 35, pp 5780-5793, IEEE, 2023. (DOI).
43. Efficient Hierarchical Storage Management Empowered by Reinforcement Learning Extended Abstract. Tianru Zhang, Andreas Hellander, and Salman Toor. In , pp 3869-3870, IEEE, 2023. (DOI).
44. Federated Machine Learning for Resource Allocation in Multi-domain Fog Ecosystems. Weilin Zhang, Salman Toor, and Mays Al-Naday. In 2023 IEEE 12th International Conference on Cloud Networking, CLOUDNET, IEEE International Conference on Cloud Networking, pp 290-298, Institute of Electrical and Electronics Engineers (IEEE), 2023. (DOI).
45. Solving inverse scattering problems via reduced-order model embedding procedures. Jörn Zimmerling, Vladimir Druskin, Murthy N Guddati, Elena Cherkaev, and Rob F Remis. In Inverse Problems, volume 40, number 2, Institute of Physics Publishing (IOPP), 2023. (DOI, Fulltext, fulltext:print).

2022

1. Task adapted reconstruction for inverse problems. Jonas Adler, Sebastian Lunz, Olivier Verdier, Carola-Bibiane Schonlieb, and Ozan Öktem. In Inverse Problems, volume 38, number 7, IOP Publishing, 2022. (DOI, Fulltext, fulltext:print).
2. FedQAS: Privacy-Aware Machine Reading Comprehension with Federated Learning. Addi Ait-Mlouk, Sadi Alawadi, Salman Toor, and Andreas Hellander. In Applied Sciences, volume 12, number 6, MDPI, 2022. (DOI, Fulltext, fulltext:print).
3. ASSERT: A Blockchain-Based Architectural Approach for Engineering Secure Self-Adaptive IoT Systems. Fahed Alkhabbas, Mohammed Alsadi, Sadi Alawadi, Feras M. Awaysheh, Victor R. Kebande, and Mahyar T. Moghaddam. In Sensors, volume 22, number 18, MDPI, 2022. (DOI, Fulltext, fulltext:print).
4. A comparison of machine learning algorithms on design smell detection using balanced and imbalanced dataset: A study of God class. Khalid Alkharabsheh, Sadi Alawadi, Victor R. Kebande, Yania Crespo, Manuel Fernández-Delgado, and José Á. Taboada. In Information and Software Technology, volume 143, Elsevier, 2022. (DOI, Fulltext, fulltext:print).
5. Prioritization of god class design smell: A multi-criteria based approach. Khalid Alkharabsheh, Sadi Alawadi, Karam Ignaim, Nabeel Zanoon, Yania Crespo, Esperanza Manso, and Jose A. Taboada. In JOURNAL OF KING SAUD UNIVERSITY-COMPUTER AND INFORMATION SCIENCES, volume 34, number 10, pp 9332-9342, Elsevier, 2022. (DOI, Fulltext, fulltext:print).
6. A parallel low-rank solver for the six-dimensional Vlasov-Maxwell equations. F. Allmann-Rahn, R. Grauer, and Katharina Kormann. In Journal of Computational Physics, volume 469, Elsevier, 2022. (DOI).
7. Deep microlocal reconstruction for limited-angle tomography. Hector Andrade-Loarca, Gitta Kutyniok, Ozan Öktem, and Philipp Petersen. In Applied and Computational Harmonic Analysis, volume 59, pp 155-197, Elsevier, 2022. (DOI, Fulltext, fulltext:print).
8. The deal.II library, Version 9.4. Daniel Arndt, Wolfgang Bangerth, Marco Feder, Marc Fehling, Rene Gassmöller, Timo Heister, Luca Heltai, Martin Kronbichler, Matthias Maier, Peter Munch, Jean-Paul Pelteret, Simon Sticko, Bruno Turcksin, and David Wells. In Journal of Numerical Mathematics, volume 30, number 3, pp 231-246, Walter de Gruyter, 2022. (DOI).
9. A deep learning framework for characterization of genotype data. Kristiina Ausmees and Carl Nettelblad. In G3: Genes, Genomes, Genetics, volume 12, number 3, Oxford University Press (OUP), 2022. (DOI, Fulltext, fulltext:print).
10. An empirical evaluation of genotype imputation of ancient DNA. Kristiina Ausmees, Federico Sanchez-Quinto, Mattias Jakobsson, and Carl Nettelblad. In G3: Genes, Genomes, Genetics, volume 12, number 6, Oxford University Press, 2022. (DOI, Fulltext, fulltext:print).
11. Security by Design for Big Data Frameworks Over Cloud Computing. F. M. Awaysheh, M. N. Aladwan, M. Alazab, Sadi Alawadi, J. C. Cabaleiro, and T. F. Pena. In IEEE transactions on engineering management, volume 69, number 6, pp 3676-3693, Institute of Electrical and Electronics Engineers (IEEE), 2022. (DOI).
12. An Exact Schur Complement Method for Time-Harmonic Optimal Control Problems. Owe Axelsson, Dalibor Lukáš, and Maya Neytcheva. In Large-Scale Scientific Computing (LSSC 2021), volume 13127 of Lecture Notes in Computer Science, pp 91-100, Springer, 2022. (DOI).
13. Statistical Convergence via q-Calculus and a Korovkin's Type Approximation Theorem. Mohammad Ayman Mursaleen and Stefano Serra-Capizzano. In Axioms, volume 11, number 2, MDPI AG, 2022. (DOI, Fulltext, External link, fulltext:print).
14. Preconditioners for fractional diffusion equations based on the spectral symbol. Nikos Barakitis, Sven-Erik Ekström, and Paris Vassalos. In Numerical Linear Algebra with Applications, volume 29, number 5, John Wiley & Sons, 2022. (DOI).
15. Rectangular GLT sequences. Giovanni Barbarino, Carlo Garoni, Mariarosa Mazza, and Stefano Serra-Capizzano. In Electronic Transactions on Numerical Analysis, volume 55, pp 585-617, Osterreichische Akademie der Wissenschaften, Verlag, 2022. (DOI, Fulltext, fulltext:print).
16. Fast Toeplitz eigenvalue computations, joining interpolation-extrapolation matrix-less algorithms and simple-loop theory. Manuel Bogoya, Sven-Erik Ekström, and Stefano Serra-Capizzano. In Numerical Algorithms, number 91, pp 1653-1676, Springer Nature, 2022. (DOI).
17. Fine spectral estimates with applications to the optimally fast solution of large FDE linear systems. Manuel Bogoya, Sergei M Grudsky, Stefano Serra-Capizzano, and Cristina Tablino-Possio. In BIT Numerical Mathematics, volume 62, number 4, pp 1417-1431, Springer Nature, 2022. (DOI, Fulltext, fulltext:print).
18. Upper Hessenberg and Toeplitz Bohemian matrix sequences: a note on their asymptotical eigenvalues and singular values. Manuel Bogoya, Stefano Serra-Capizzano, and Ken Trotti. In Electronic Transactions on Numerical Analysis, volume 55, pp 76-91, Osterreichische Akademie der Wissenschaften, Verlag, 2022. (DOI, Fulltext, fulltext:print).
19. Toeplitz momentary symbols: definition, results, and limitations in the spectral analysis of structured matrices. Matthias Bolten, Sven-Erik Ekström, Isabella Furci, and Stefano Serra-Capizzano. In Linear Algebra and its Applications, volume 651, pp 51-82, 2022. (DOI).
20. Surface flow for colonial integration in reef-building corals. Thibault Bouderlique, Julian Petersen, Louis Faure, Daniel Abed-Navandi, Anass Bouchnita, Benjamin Mueller, Murtazo Nazarov, Lukas Englmaier, Marketa Tesarova, Pedro R. Frade, Tomas Zikmund, Till Koehne, Jozef Kaiser, Kaj Fried, Christian Wild, Olga Pantos, Andreas Hellander, John Bythell, and Igor Adameyko. In Current Biology, volume 32, number 12, pp 2596-2609, Elsevier, 2022. (DOI, Fulltext, fulltext:print).
21. A joint use of pooling and imputation for genotyping SNPs. Camille Clouard, Kristiina Ausmees, and Carl Nettelblad. In BMC Bioinformatics, volume 23, Springer Nature, 2022. (DOI, Fulltext, fulltext:print).
22. Ultra and Very Long Period Seismic Signatures of Unsteady Eruptions Predicted From Conduit Flow Models. Katherine R. Coppess, Eric M. Dunham, and Martin Almquist. In Journal of Geophysical Research - Solid Earth, volume 127, number 6, American Geophysical Union (AGU), 2022. (DOI, Fulltext, fulltext:print).
23. Systematic comparison of modeling fidelity levels and parameter inference settings applied to negative feedback gene regulation. Adrien Coulier, Prashant Singh, Marc Sturrock, and Andreas Hellander. In PloS Computational Biology, volume 18, number 12, Public Library of Science (PLoS), 2022. (DOI, Fulltext, fulltext:print).
24. A High-Order Residual-Based Viscosity Finite Element Method for the Ideal MHD Equations. Tuan Anh Dao and Murtazo Nazarov. In Journal of Scientific Computing, volume 92, number 3, Springer Nature, 2022. (DOI, Fulltext, fulltext:print).
25. Energy stable and accurate coupling of finite element methods and finite difference methods. Tuan Anh Dao, Ken Mattsson, and Murtazo Nazarov. In Journal of Computational Physics, volume 449, Elsevier, 2022. (DOI, Fulltext, fulltext:print).
26. Monolithic parabolic regularization of the MHD equations and entropy principles. Tuan Anh Dao and Murtazo Nazarov. In Computer Methods in Applied Mechanics and Engineering, volume 398, Elsevier, 2022. (DOI, Fulltext, fulltext:print).
27. Acceleration of RBF-FD meshless phase-field modelling of dendritic solidification by space-time adaptive approach. Tadej Dobravec, Bostjan Mavric, and Bozidar Sarler. In Computers and Mathematics with Applications, volume 126, pp 77-99, Elsevier, 2022. (DOI, Fulltext, fulltext:print).
28. On energy stable discontinuous Galerkin spectral element approximations of the perfectly matched layer for the wave equation (vol 350, pg 898, 2019). K. Duru, A. -A Gabriel, and Gunilla Kreiss. In Computer Methods in Applied Mechanics and Engineering, volume 398, Elsevier, 2022. (DOI, Fulltext, fulltext:print).
29. Students' learning process in the computer laboratory. Anna Eckerdal, Anders Berglund, and Michael Thuné. In 2022 IEEE Frontiers in Education Conference (FIE), IEEE Frontiers in Education Conference, Institute of Electrical and Electronics Engineers (IEEE), 2022. (DOI).
30. Scalable federated machine learning with FEDn. Morgan Ekmefjord, Addi Ait-Mlouk, Sadi Alawadi, Mattias Akesson, Prashant Singh, Ola Spjuth, Salman Toor, and Andreas Hellander. In 2022 22nd IEEE/ACM International Symposium on Cluster, Cloud and Internet Computing (CCGrid 2022), pp 555-564, Institute of Electrical and Electronics Engineers (IEEE), 2022. (DOI).
31. A matrix-less method to approximate the spectrum and the spectral function of Toeplitz matrices with real eigenvalues. Sven-Erik Ekström and Paris Vassalos. In Numerical Algorithms, volume 89, number 2, pp 701-720, Springer Nature, 2022. (DOI, Fulltext, fulltext:print).
32. Weak Versus Strong Wall Boundary Conditions for the Incompressible Navier-Stokes Equations. Gustav Eriksson and Ken Mattsson. In Journal of Scientific Computing, volume 92, number 3, Springer Nature, 2022. (DOI, Fulltext, fulltext:print).
33. Quantum Perturbation Theory Using Tensor Cores and a Deep Neural Network. Joshua Finkelstein, Emanuel H. Rubensson, Susan M. Mniszewski, Christian F. A. Negre, and Anders M. N. Niklasson. In Journal of Chemical Theory and Computation, volume 18, number 7, pp 4255-4268, American Chemical Society (ACS), 2022. (DOI).
34. High Order Discontinuous Cut Finite Element Methods for Linear Hyperbolic Conservation Laws with an Interface. Pei Fu, Thomas Frachon, Gunilla Kreiss, and Sara Zahedi. In Journal of Scientific Computing, volume 90, Springer Nature, 2022. (DOI, Fulltext, fulltext:print).
35. The positivity preserving property on the high order arbitrary Lagrangian-Eulerian discontinuous Galerkin method for Euler equations. Pei Fu and Yinhua Xia. In Journal of Computational Physics, volume 470, Elsevier, 2022. (DOI).
36. On the implementation of a robust and efficient finite element-based parallel solver for the compressible Navier-Stokes equations. Jean-Luc Guermond, Martin Kronbichler, Matthias Maier, Bojan Popov, and Ignacio Tomas. In Computer Methods in Applied Mechanics and Engineering, volume 389, p 114250, Elsevier, 2022. (DOI).
37. Band-Toeplitz preconditioners for ill-conditioned Toeplitz systems. Sean Hon, Stefano Serra-Capizzano, and Andy Wathen. In BIT Numerical Mathematics, volume 62, pp 465-491, Springer Nature, 2022. (DOI).
38. Mixed bioconvection flow of Ag-MgO/water in the presence of oxytactic bacteria and inclined periodic magnetic field. Shafqat Hussain and Bengisen Pekmen Geridonmez. In International Communications in Heat and Mass Transfer, volume 134, Elsevier, 2022. (DOI).
39. To test, or not to test: A proactive approach for deciding complete performance test initiation. Omar Javed, Prashant Singh, Giles Reger Reger, and Salman Toor. In BIG-DATA 2022, pp 4758-4767, IEEE, 2022. (DOI).
40. Identification of dynamic mass-action biochemical reaction networks using sparse Bayesian methods. Richard Jiang, Prashant Singh, Fredrik Wrede, Andreas Hellander, and Linda Petzold. In PloS Computational Biology, volume 18, number 1, Public Library of Science (PLoS), 2022. (DOI, Fulltext, fulltext:print).
41. Altered developmental programs and oriented cell divisions lead to bulky bones during salamander limb regeneration. Marketa Kaucka, Alberto Joven Araus, Marketa Tesarova, Joshua D. Currie, Johan Boström, Michaela Kavkova, Julian Petersen, Zeyu Yao, Anass Bouchnita, Andreas Hellander, Tomas Zikmund, Ahmed Elewa, Phillip T. Newton, Ji-Feng Fei, Andrei S. Chagin, Kaj Fried, Elly M. Tanaka, Jozef Kaiser, Andras Simon, and Igor Adameyko. In Nature Communications, volume 13, Springer Nature, 2022. (DOI, Fulltext, fulltext:print).
42. App-based COVID-19 syndromic surveillance and prediction of hospital admissions in COVID Symptom Study Sweden. Beatrice Kennedy, Hugo Fitipaldi, Ulf Hammar, Marlena Maziarz, Neli Tsereteli, Nikolay Oskolkov, Georgios Varotsis, Camilla A. Franks, Diem Nguyen, Lampros Spiliopoulos, Hans-Olov Adami, Jonas Björk, Stefan Engblom, Katja Fall, Anna Grimby-Ekman, Jan-Eric Litton, Mats Martinell, Anna Oudin, Torbjörn Sjöström, Toomas Timpka, Carole H. Sudre, Mark S. Graham, Julien Lavigne du Cadet, Andrew T. Chan, Richard Davies, Sajaysurya Ganesh, Anna May, Sébastien Ourselin, Joan Capdevila Pujol, Somesh Selvachandran, Jonathan Wolf, Tim D. Spector, Claire J. Steves, Maria F. Gomez, Paul W. Franks, and Tove Fall. In Nature Communications, volume 13, Springer Nature, 2022. (DOI, Fulltext, fulltext:print).
43. A Computable Definition of the Spectral Bias. Jonas Kiessling and Filip Thor. In Proceedings of the AAAI Conference on Artificial Intelligence, volume 36, number 7, pp 7168-7175, AAAI Press, 2022. (DOI).
44. A numerical investigation of some RBF-FD error estimates. Elisabeth Larsson, Boštjan Mavri?, Andreas Michael, and Fatemeh Pooladi. In Dolomites Research Notes on Approximation, volume 15, number 5, pp 78-95, Padova University Press, 2022. (DOI).
45. Exact inverse solution techniques for a class of complex valued block two-by-two linear systems. Zhao-Zheng Liang and Owe Axelsson. In Numerical Algorithms, volume 90, number 1, pp 79-98, Springer, 2022. (DOI, Fulltext).
46. CBMOS: a GPU-enabled Python framework for the numerical study of center-based models. Sonja Mathias, Adrien Coulier, and Andreas Hellander. In BMC Bioinformatics, volume 23, Springer Nature, 2022. (DOI, Fulltext, fulltext:print).
47. Spectral Analysis of the Finite Element Matrices Approximating 3D Linearly Elastic Structures and Multigrid Proposals. Quoc Khanh Nguyen, Stefano Serra-Capizzano, Cristina Tablino-Possio, and Eddie Wadbro. In Mathematical and Computational Applications, volume 27, number 5, MDPI, 2022. (DOI, Fulltext, fulltext:print).
48. Spectral analysis of the finite element matrices approximating 2D linearly elastic structures and multigrid proposals. Quoc Khanh Nguyen, Stefano Serra-Capizzano, Cristina Tablino-Possio, and Eddie Wadbro. In Numerical Linear Algebra with Applications, volume 29, number 4, John Wiley & Sons, 2022. (DOI, Fulltext, fulltext:print).
49. Variational Framework for Structure-Preserving Electromagnetic Particle-in-Cell Methods. Martin Campos Pinto, Katharina Kormann, and Eric Sonnendruecker. In Journal of Scientific Computing, volume 91, number 2, Springer Nature, 2022. (DOI, Fulltext, fulltext:print).
50. A meshless solution of the compressible viscous flow in axisymmetric tubes with varying cross-sections. Khush Bakhat Rana, Bostjan Mavric, Rizwan Zahoor, and Bozidar Sarler. In Engineering analysis with boundary elements, volume 143, pp 340-352, Elsevier, 2022. (DOI, Fulltext, fulltext:print).
51. The Chunks and Tasks Matrix Library. Emanuel H. Rubensson, Elias Rudberg, Anastasia Kruchinina, and Anton G. Artemov. In SoftwareX, volume 19, Elsevier, 2022. (DOI, Fulltext, External link, fulltext:print).
52. Distribution results for a special class of matrix sequences: joining approximation theory and asymptotic linear algebra. Alec Jacopo Almo Schiavoni-Piazza and Stefano Serra-Capizzano. In Electronic Transactions on Numerical Analysis, volume 59, pp 1-8, Kent State University Press, 2022. (DOI, External link).
53. Block and Text Programming in Swedish High School: What do students know on their first day?. Johan Snider, Erik Bokström, Kasper Davidsson, Anna Eckerdal, and Robin Kastberg. In 2022 IEEE Frontiers in Education Conference (FIE), IEEE Frontiers in Education Conference, Institute of Electrical and Electronics Engineers (IEEE), 2022. (DOI).
54. Living in darkness: Exploring adaptation of <em>Proteus anguinus</em> in 3 dimensions by X-ray imaging. Marketa Tesarova, Lucia Mancini, Edgardo Mauri, Gregor Aljancic, Magdalena Naparus-Aljancic, Rok Kostanjsek, Lilijana Bizjak Mali, Tomas Zikmund, Marketa Kaucka, Federica Papi, Jana Goyens, Anass Bouchnita, Andreas Hellander, Igor Adameyko, and Jozef Kaiser. In GigaScience, volume 11, Oxford University Press, 2022. (DOI, Fulltext, fulltext:print).
55. An unfitted radial basis function generated finite difference method applied to thoracic diaphragm simulations. Igor Tominec, Pierre-Frederic Villard, Elisabeth Larsson, Victor Bayona, and Nicola Cacciani. In Journal of Computational Physics, volume 469, p 111496, Elsevier, 2022. (DOI, Fulltext, fulltext:print).
56. An Energy-Based Summation-by-Parts Finite Difference Method For the Wave Equation in Second Order Form. Siyang Wang, Daniel Appelo, and Gunilla Kreiss. In Journal of Scientific Computing, volume 91, number 2, Springer Nature, 2022. (DOI, Fulltext, fulltext:print).
57. Stability analysis of high order methods for the wave equation. Ivy Weber, Gunilla Kreiss, and Murtazo Nazarov. In Journal of Computational and Applied Mathematics, volume 404, Elsevier, 2022. (DOI, Fulltext, fulltext:print).
58. Robust and integrative Bayesian neural networks for likelihood-free parameter inference. Fredrik Wrede, Robin Eriksson, Richard Jiang, Linda Petzold, Stefan Engblom, Andreas Hellander, and Prashant Singh. In 2022 International Joint Conference on Neural Networks (IJCNN), IEEE International Joint Conference on Neural Networks (IJCNN), pp 1-10, Institute of Electrical and Electronics Engineers (IEEE), 2022. (DOI, Fulltext).
59. Convolutional Neural Networks as Summary Statistics for Approximate Bayesian Computation. Mattias Åkesson, Prashant Singh, Fredrik Wrede, and Andreas Hellander. In IEEE/ACM Transactions on Computational Biology & Bioinformatics, volume 19, number 6, pp 3353-3365, IEEE, 2022. (DOI, External link).

2021

1. A Federated Interactive Learning IoT-Based Health Monitoring Platform. Sadi Alawadi, Victor R. Kebande, Yuji Dong, Joseph Bugeja, Jan A. Persson, and Carl Magnus Olsson. In New trends in database and information systems, ADBIS 2021, Communications in Computer and Information Science, pp 235-246, Springer Nature, 2021. (DOI).
2. Analysing Agreement Among Different Evaluators in God Class and Feature Envy Detection. Khalid Alkharabsheh, Sadi Alawadi, Yania Crespo, M. Esperanza Manso, and Jose A. Taboada Gonzalez. In IEEE Access, volume 9, pp 145191-145211, Institute of Electrical and Electronics Engineers (IEEE), 2021. (DOI, Fulltext, fulltext:print).
3. Elastic wave propagation in anisotropic solids using energy-stable finite differences with weakly enforced boundary and interface conditions. Martin Almquist and Eric M. Dunham. In Journal of Computational Physics, volume 424, Elsevier, 2021. (DOI, External link).
4. The deal. II library, Version 9.3. Daniel Arndt, Wolfgang Bangerth, Bruno Blais, Marc Fehling, Rene Gassmoller, Timo Heister, Luca Heltai, Uwe Koecher, Martin Kronbichler, Matthias Maier, Peter Munch, Jean-Paul Pelteret, Sebastian Proell, Konrad Simon, Bruno Turcksin, David Wells, and Jiaqi Zhang. In Journal of Numerical Mathematics, volume 29, number 3, pp 171-186, Walter de Gruyter, 2021. (DOI).
5. Sparse approximate matrix-matrix multiplication for density matrix purification with error control. Anton G. Artemov and Emanuel H. Rubensson. In Journal of Computational Physics, volume 438, Elsevier, 2021. (DOI, Fulltext, fulltext:print).
6. Inner product free iterative solution and elimination methods for linear systems of a three-by-three block matrix form. Owe Axelsson, Zhao-Zheng Liang, Jakub Kruzik, and David Horak. In Journal of Computational and Applied Mathematics, volume 383, 2021. (DOI).
7. Krylov improvements of the Uzawa method for Stokes type operator matrices. Owe Axelsson and Janos Karatson. In Numerische Mathematik, volume 148, number 3, pp 611-631, Springer, 2021. (DOI, Fulltext, fulltext:print).
8. Fast Parallel Solver for the Space-time IgA-DG Discretization of the Diffusion Equation. Pietro Benedusi, Paola Ferrari, Carlo Garoni, Rolf Krause, and Stefano Serra-Capizzano. In Journal of Scientific Computing, volume 89, number 1, Springer, 2021. (DOI, Fulltext, fulltext:print).
9. Rapid development of cloud-native intelligent data pipelines for scientific data streams using the HASTE Toolkit. Ben Blamey, Salman Toor, Martin Dahlö, Håkan Wieslander, Philip J. Harrison, Ida-Maria Sintorn, Alan Sabirsh, Carolina Wählby, Ola Spjuth, and Andreas Hellander. In GigaScience, volume 10, number 3, pp 1-14, Oxford University Press, 2021. (DOI, Fulltext, fulltext:print).
10. Numerical Simulations of Surface Quasi-Geostrophic Flows on Periodic Domains. Andrea Bonito and Murtazo Nazarov. In SIAM Journal on Scientific Computing, volume 43, number 2, pp B405-B430, Society for Industrial and Applied Mathematics, 2021. (DOI).
11. Distributed and Adaptive Fast Multipole Method in Three Dimensions. Jonathan R. Bull and Stefan Engblom. In Communications in Computational Physics, volume 30, number 4, pp 959-984, Global Science Press, 2021. (DOI).
12. Cell-by-cell approximate Schur complement technique in preconditioning of meshfree discretized piezoelectric equations. Yang Cao and Maya Neytcheva. In Numerical Linear Algebra with Applications, volume 28, number 4, John Wiley & Sons, 2021. (DOI).
13. Sensitivity of ice sheet surface velocity and elevation to variations in basal friction and topography in the full Stokes and shallow-shelf approximation frameworks using adjoint equations. Gong Cheng, Nina Kirchner, and Per Lötstedt. In The Cryosphere, volume 15, number 2, pp 715-742, Copernicus Publications, 2021. (DOI, Fulltext, fulltext:print).
14. A multiscale compartment-based model of stochastic gene regulatory networks using hitting-time analysis. Adrien Coulier, Stefan Hellander, and Andreas Hellander. In Journal of Chemical Physics, volume 154, number 18, American Institute of Physics (AIP), 2021. (DOI, Fulltext, External link, fulltext:print).
15. Ptychographic wavefront characterization for single-particle imaging at x-ray lasers. Benedikt J. Daurer, Simone Sala, Max Hantke, Hemanth K.N. Reddy, Johan Bielecki, Zhou Shen, Carl Nettelblad, Martin Svenda, Tomas Ekeberg, Gabriella A. Carini, Philip Hart, Timur Osipov, Andrew Aquila, N. Duane Loh, Filipe R.N.C. Maia, and Pierre Thibault. In Optica, volume 8, number 4, pp 551-562, Optical Society of America, 2021. (DOI, Fulltext, External link, fulltext:print).
16. PDE-Constrained Optimization: Optimal control with L1-Regularization, State and Control Box Constraints. Ivo Dravins and Maya Neytcheva. In Numerical Mathematics and Advanced Applications ENUMATH 2019: Lecture Notes in Computational Science and Engineering, volume 139 of Lecture Notes in Computational Science and Engineering, pp 323-331, Cham, 2021. (DOI, External link).
17. Eigenvalues and Eigenvectors of Tau Matrices with Applications to Markov Processes and Economics. Sven-Erik Ekström, Carlo Garoni, Adam Jozefiak, and Jesse Perla. In Linear Algebra and its Applications, volume 627, pp 41-71, 2021. (DOI, Fulltext, fulltext:print).
18. Towards Confident Bayesian Parameter Estimation in Stochastic Chemical Kinetics. Stefan Engblom, Robin Eriksson, and Pedro Vilanova. In Numerical Mathematics and Advanced Applications ENUMATH 2019: European Conference, Egmond aan Zee, The Netherlands, September 30 - October 4, volume 139 of Lecture Notes in Computational Science and Engineering (LNCSE), pp 373-380, Springer Nature, 2021. (DOI).
19. Numerical evidence of anomalous energy dissipation in incompressible Euler flows: towards grid-converged results for the inviscid Taylor-Green problem. Niklas Fehn, Martin Kronbichler, Peter Munch, and Wolfgang A. Wall. In Journal of Fluid Mechanics, volume 932, Cambridge University Press, 2021. (DOI).
20. Asymptotic spectra of large matrices coming from the symmetrization of Toeplitz structure functions and applications to preconditioning. Paola Ferrari, Nikos Barakitis, and Stefano Serra-Capizzano. In Numerical Linear Algebra with Applications, volume 28, number 1, John Wiley & Sons, 2021. (DOI).
21. Multilevel symmetrized Toeplitz structures and spectral distribution results for the related matrix sequences. Paola Ferrari, Isabella Furci, and Stefano Serra-Capizzano. In The Electronic Journal of Linear Algebra, volume 37, pp 370-386, University of Wyoming Libraries, 2021. (DOI, Fulltext).
22. Mixed Precision Fermi-Operator Expansion on Tensor Cores from a Machine Learning Perspective. Joshua Finkelstein, Justin S. Smith, Susan M. Mniszewski, Kipton Barros, Christian F. A. Negre, Emanuel H. Rubensson, and Anders M. N. Niklasson. In Journal of Chemical Theory and Computation, volume 17, number 4, pp 2256-2265, American Chemical Society (ACS), 2021. (DOI).
23. Quantum-Based Molecular Dynamics Simulations Using Tensor Cores. Joshua Finkelstein, Justin S. Smith, Susan M. Mniszewski, Kipton Barros, Christian F. A. Negre, Emanuel H. Rubensson, and Anders M. N. Niklasson. In Journal of Chemical Theory and Computation, volume 17, number 10, pp 6180-6192, American Chemical Society (ACS), 2021. (DOI).
24. High Order Cut Discontinuous Galerkin Methods For Hyperbolic Conservation Laws In One Space Dimension. Pei Fu and Gunilla Kreiss. In SIAM Journal on Scientific Computing, volume 43, number 4, pp A2404-A2424, Society for Industrial and Applied Mathematics, 2021. (DOI).
25. Deep-learning models for lipid nanoparticle-based drug delivery. Philip J. Harrison, Håkan Wieslander, Alan Sabirsh, Johan Karlsson, Victor Malmsjö, Andreas Hellander, Carolina Wählby, and Ola Spjuth. In Nanomedicine, volume 16, number 13, pp 1097-1110, Future Medicine, 2021. (DOI, Fulltext).
26. Joint Compression and Offloading Decisions for Deep Learning Services in 3-Tier Edge Systems. Minoo Hosseinzadeh, Nathaniel Hudson, Xiaobo Zhao, Hana Khamfroush, and Daniel E. Lucani. In 2021 IEEE International Symposium On Dynamic Spectrum Access Networks (DYSPAN), IEEE International Symposium on Dynamic Spectrum Access Networks, pp 254-261, Institute of Electrical and Electronics Engineers (IEEE), 2021. (DOI).
27. An Evaluation of Container Security Vulnerability Detection Tools. Omar Javed and Salman Toor. In , pp 95-101, New York, United States, 2021. (DOI).
28. Epidemiological modeling in StochSS Live!. Richard Jiang, Bruno Jacob, Matthew Geiger, Sean Matthew, Bryan Rumsey, Prashant Singh, Fredrik Wrede, Tau-Mu Yi, Brian Drawert, Andreas Hellander, and Linda Petzold. In Bioinformatics, volume 37, number 17, pp 2787-2788, Oxford University Press, 2021. (DOI, Fulltext, External link).
29. Accelerated regression-based summary statistics for discrete stochastic systems via approximate simulators. Richard M. Jiang, Fredrik Wrede, Prashant Singh, Andreas Hellander, and Linda R. Petzold. In BMC Bioinformatics, volume 22, BioMed Central (BMC), 2021. (DOI, Fulltext, fulltext:print).
30. Evaluation of serverless computing for scalable execution of a joint variant calling workflow. Aji John, Kathleen Muenzen, and Kristiina Ausmees. In PLOS ONE, volume 16, number 7, Public Library of Science (PLoS), 2021. (DOI, Fulltext, fulltext:print).
31. Proactive Autoscaling for Edge Computing Systems with Kubernetes. Li Ju, Prashant Singh, and Salman Toor. In , Association for Computing Machinery (ACM), 2021. (DOI).
32. A Blockchain-Based Multi-Factor Authentication Model for a Cloud-Enabled Internet of Vehicles. Victor R. Kebande, Feras M. Awaysheh, Richard A. Ikuesan, Sadi Alawadi, and Mohammad Dahman Alshehri. In Sensors, volume 21, number 18, MDPI, 2021. (DOI, Fulltext, fulltext:print).
33. Active Machine Learning Adversarial Attack Detection in the User Feedback Process. Victor R. Kebande, Sadi Alawadi, Feras M. Awaysheh, and Jan A. Persson. In IEEE Access, volume 9, pp 36908-36923, Institute of Electrical and Electronics Engineers (IEEE), 2021. (DOI, Fulltext, fulltext:print).
34. Digital forensic readiness intelligence crime repository. Victor R. Kebande, Nickson M. Karie, Kim-Kwang Raymond Choo, and Sadi Alawadi. In SECURITY AND PRIVACY, volume 4, number 3, John Wiley & Sons, 2021. (DOI, Fulltext).
35. Towards a Learning-enabled Virtual Sensor Forensic Architecture Compliant with Edge Intelligence. Victor R. Kebande, Richard Adeyemi Ikuesan, Feras M. Awaysheh, and Sadi Alawadi. In 2021 Second International Conference on Intelligent Data Science Technologies and Applications (IDSTA), pp 154-161, Institute of Electrical and Electronics Engineers (IEEE), 2021. (DOI).
36. Resonant inelastic x-ray scattering at the N₂ ?*-resonance: Lifetime-vibrational interference, radiative electron rearrangement, and wave-function imaging. Ludvig Kjellsson, Victor Ekholm, Marcus Agåker, Conny Såthe, A. Pietzsch, Hans O. Karlsson, N. Jaouen, A. Nicolau, M. Guarise, C. Hague, J. Lüning, S.G. Chiuzb?ian, and Jan-Erik Rubensson. In Physical Review A. Atomic, Molecular, and Optical Physics, volume 103, American Physical Society, 2021. (DOI, Fulltext, fulltext:print).
37. A next-generation discontinuous Galerkin fluid dynamics solver with application to high-resolution lung airflow simulations. Martin Kronbichler, Niklas Fehn, Peter Munch, Maximilian Bergbauer, Karl-Robert Wichmann, Carolin Geitner, Momme Allalen, Martin Schulz, and Wolfgang A. Wall. In SC21: Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, pp 1-15, Association for Computing Machinery (ACM), St. Louis, MO, USA, 2021. (DOI).
38. Jupyter Notebooks on GitHub: Characteristics and Code Clones. Malin Källén and Tobias Wrigstad. In The Art, Science, and Engineering of Programming, volume 5, number 3, 2021. (DOI, Fulltext, fulltext:print).
39. A high order accurate finite difference method for the Drinfel’d-Sokolov-Wilson equation. Ludvig Lindeberg, Tuan Anh Dao, and Ken Mattsson. In Journal of Scientific Computing, volume 88, number 1, Springer Nature, 2021. (DOI).
40. A high-order finite-difference scheme to model the fluid-structure interaction in pneumatic seismic sources. Ludvig Lindeberg, Ylva Ljungberg Rydin, and Leighton M. Watson. In Journal of Computational Physics, volume 424, Elsevier, 2021. (DOI).
41. High-order finite difference method for the Schrödinger equation on deforming domains. Ylva Ljungberg Rydin, Ken Mattsson, Jonatan Werpers, and Erik Sjöqvist. In Journal of Computational Physics, volume 443, Elsevier, 2021. (DOI, Fulltext, fulltext:print).
42. Derivation of continuum models from discrete models of mechanical forces in cell populations. Per Lötstedt. In Journal of Mathematical Biology, volume 83, number 6-7, Springer Nature, 2021. (DOI, Fulltext, fulltext:print).
43. Digital forensic readiness in operational cloud leveraging ISO/IEC 27043 guidelines on security monitoring. Sheunesu Makura, H.S. Venter, Victor R. Kebande, Nickson M. Karie, Richard A. Ikuesan, and Alawadi Sadi. In Security and Privacy Journal, volume 4, number 3, John Wiley & Sons, 2021. (DOI, Fulltext, fulltext:print).
44. Symbol-based preconditioning for Riesz distributed-order space-fractional diffusion equations. Mariarosa Mazza, Stefano Serra-Capizzano, and Muhammad Usman. In Electronic Transactions on Numerical Analysis, volume 54, pp 499-513, 2021. (DOI, Fulltext).
45. DecFL: An Ubiquitous Decentralized Model Training Protocol and Framework Empowered by Blockchain. Felix Morsbach and Salman Toor. In BSCI '21: Proceedings of the 3rd ACM International Symposium on Blockchain and Secure Critical Infrastructure, pp 61-70, 2021. (DOI).
46. hyper.deal: An Efficient, Matrix-free Finite-element Library for High-dimensional Partial Differential Equations. Peter Munch, Katharina Kormann, and Martin Kronbichler. In ACM Transactions on Mathematical Software, volume 47, number 4, pp 1-34, Association for Computing Machinery (ACM), 2021. (DOI).
47. Ultrafast dynamics and scattering of protic ionic liquids induced by XFEL pulses. Kajwal Patra Kumar, Ibrahim Eliah Dawod, Martin, Andrew, V, Tamar L. Greaves, Daniel Persson, Carl Caleman, and Nicusor Timneanu. In Journal of Synchrotron Radiation, volume 28, number 5, pp 1296-1308, International Union Of Crystallography, 2021. (DOI, Fulltext, fulltext:print).
48. Localized inverse factorization. Emanuel H. Rubensson, Anton G. Artemov, Anastasia Kruchinina, and Elias Rudberg. In IMA Journal of Numerical Analysis, volume 41, number 1, pp 729-763, 2021. (DOI, Fulltext, fulltext:print).
49. Training algorithm matters for the performance of neural network potential: A case study of Adam and the Kalman filter optimizers. Yunqi Shao, Florian M. Dietrich, Carl Nettelblad, and Chao Zhang. In Journal of Chemical Physics, volume 155, number 20, American Institute of Physics (AIP), 2021. (DOI, Fulltext, fulltext:print).
50. Scalable machine learning-assisted model exploration and inference using Sciope. Prashant Singh, Fredrik Wrede, and Andreas Hellander. In Bioinformatics, volume 37, number 2, pp 279-281, Oxford University Press, 2021. (DOI, Fulltext, fulltext:print).
51. The smallest singular value of certain Toeplitz-related parametric triangular matrices. Maryam Shams Solary, Alexander Kovacec, and Stefano Serra-Capizzano. In Special Matrices, volume 9, number 1, pp 103-111, Walter de Gruyter, 2021. (DOI, Fulltext, fulltext:print).
52. The machine learning life cycle and the cloud: implications for drug discovery.. Ola Spjuth, Jens Frid, and Andreas Hellander. In Expert Opinion on Drug Discovery, volume 16, number 9, pp 1071-1079, Taylor & Francis, 2021. (DOI, Fulltext).
53. A residual-based artificial viscosity finite difference method for scalar conservation laws. Vidar Stiernström, Lukas Lundgren, Murtazo Nazarov, and Ken Mattsson. In Journal of Computational Physics, volume 430, Elsevier, 2021. (DOI, Fulltext, fulltext:print).
54. A Least Squares Radial Basis Function Finite Difference Method with Improved Stability Properties. Igor Tominec, Elisabeth Larsson, and Alfa Heryudono. In SIAM Journal on Scientific Computing, volume 43, number 2, pp A1441-A1471, Society for Industrial and Applied Mathematics, 2021. (DOI).
55. An unfitted RBF-FD method in a least-squares setting for elliptic PDEs on complex geometries. Igor Tominec and Eva Breznik. In Journal of Computational Physics, volume 436, Elsevier, 2021. (DOI, Fulltext, fulltext:print).
56. A density matrix approach to the convergence of the self-consistent field iteration. Parikshit Upadhyaya, Elias Jarlebring, and Emanuel H. Rubensson. In Numerical Algebra, Control and Optimization, volume 11, number 1, pp 99-115, 2021. (DOI).
57. Engineering students’ strategies to learn programming correlate with motivation and gender. Maria Weurlander and Kristina von Hausswolff. In 2021 IEEE Frontiers in Education Conference (FIE), Institute of Electrical and Electronics Engineers (IEEE), 2021. (DOI).
58. Practical thinking while learning to program – novices’ experiences and hands-on encounters. Kristina von Hausswolff. In Computer Science Education, volume 0, number 0, pp 1-25, Taylor & Francis, 2021. (DOI, Fulltext, fulltext:print).

2020

1. Fractional Laplace operator in two dimensions, approximating matrices, and related spectral analysis. Lidia Aceto, Mariarosa Mazza, and Stefano Serra-Capizzano. In Calcolo, volume 57, 2020. (DOI, Fulltext).
2. Asymptotic Spectra of Large (Grid) Graphs with a Uniform Local Structure (Part I): Theory. Andrea Adriani, Davide Bianchi, and Stefano Serra-Capizzano. In Milan Journal of Mathematics, volume 88, number 2, pp 409-454, Springer Science and Business Media LLC, 2020. (DOI, Fulltext, fulltext:print).
3. Local meshless methods for second order elliptic interface problems with sharp corners. Masood Ahmad, Siraj-ul Islam, and Elisabeth Larsson. In Journal of Computational Physics, volume 416, 2020. (DOI, fulltext:postprint).
4. Non-stiff boundary and interface penalties for narrow-stencil finite difference approximations of the Laplacian on curvilinear multiblock grids. Martin Almquist and Eric M. Dunham. In Journal of Computational Physics, volume 408, 2020. (DOI, External link).
5. Modelling long-range interactions in multiscale simulations of ferromagnetic materials. Doghonay Arjmand, Mikhail Poluektov, and Gunilla Kreiss. In Advances in Computational Mathematics, volume 46, number 1, 2020. (DOI, Fulltext).
6. An Introduction and Summary of Use of Optimal Control Methods for PDE's. Owe Axelsson. In Large-Scale Scientific Computing (LSSC 2019), volume 11958 of Lecture Notes in Computer Science (LNCS), pp 275-283, 2020. (DOI).
7. Extensions of a coarse–fine mesh stabilized Schwarz alternating iteration domain decomposition method. Owe Axelsson. In Journal of Computational and Applied Mathematics, volume 364, 2020. (DOI).
8. Numerical solution methods for implicit Runge-Kutta methods of arbitrarily high order. Owe Axelsson and Maya Neytcheva. In Proceedings of the conference Algoritmy 2020, pp 11-20, 2020. (Publisher fulltext).
9. Optimality properties of a square block matrix preconditioner with applications. Owe Axelsson. In Computers and Mathematics with Applications, volume 80, pp 286-294, 2020. (DOI).
10. Regularization methods for the construction of preconditioners for saddle point problems. Owe Axelsson. In Algoritmy 2020: 21st Conference On Scientific Computing, pp 141-150, SLOVAK UNIV TECHNOLOGY, BRATISLAVA, 2020.
11. Superior properties of the PRESB preconditioner for operators on two-by-two block form with square blocks. Owe Axelsson and János Karátson. In Numerische Mathematik, volume 146, number 2, pp 335-368, 2020. (DOI, Fulltext, fulltext:print).
12. Block generalized locally Toeplitz sequences: theory and applications in the multidimensional case. Giovanni Barbarino, Carlo Garoni, and Stefano Serra-Capizzano. In Electronic Transactions on Numerical Analysis, volume 53, pp 113-216, Osterreichische Akademie der Wissenschaften, 2020. (DOI).
13. Block generalized locally Toeplitz sequences: theory and applications in the unidimensional case. Giovanni Barbarino, Carlo Garoni, and Stefano Serra-Capizzano. In Electronic Transactions on Numerical Analysis, volume 53, pp 28-112, Osterreichische Akademie der Wissenschaften, 2020. (DOI, External link, External link).
14. The exchange programme between new and different partners, Royal University of Bhutan and Uppsala University. Anders Berglund, Tsheten Dorji, Dekar Lhamo, Phurpa Tshering, Kristina von Hausswolff, Karma Wangchuk, Tandin Wangchuk, and Yeshi Wangchuk. In 2020 IEEE Frontiers in Education Conference (FIE), Frontiers in Education Conference, 2020. (DOI).
15. Apache Spark Streaming, Kafka and HarmonicIO: A performance benchmark and architecture comparison for enterprise and scientific computing. Ben Blamey, Andreas Hellander, and Salman Toor. In Benchmarking, Measuring, and Optimizing, volume 12093 of Lecture Notes in Computer Science, pp 335-347, Springer, 2020. (DOI).
16. A multiscale model to design therapeutic strategies that overcome drug resistance to tyrosine kinase inhibitors in multiple myeloma. Anass Bouchnita, Vitaly Volpert, Mark J. Koury, and Andreas Hellander. In Mathematical Biosciences, volume 319, 2020. (DOI).
17. A first meshless approach to simulation of the elastic behaviour of the diaphragm. Nicola Cacciani, Elisabeth Larsson, Alberto Lauro, Marco Meggiolaro, Alessio Scatto, Igor Tominec, and Pierre-Frédéric Villard. In Spectral and High Order Methods for Partial Differential Equations: ICOSAHOM 2018, volume 134 of Lecture Notes in Computational Science and Engineering, pp 501-512, Springer, 2020. (DOI, fulltext:postprint).
18. MaRe: Processing Big Data with application containers on Apache Spark. Marco Capuccini, Martin Dahlö, Salman Toor, and Ola Spjuth. In GigaScience, volume 9, number 5, Oxford University Press, 2020. (DOI, Fulltext, fulltext:print).
19. A Multigrid method for nonlocal problems: non-diagonally dominant Toeplitz-plus-tridiagonal systems. Minghua Chen, Sven-Erik Ekström, and Stefano Serra-Capizzano. In SIAM Journal on Matrix Analysis and Applications, volume 41, number 4, pp 1546-1570, 2020. (DOI).
20. A full Stokes subgrid scheme in two dimensions for simulation of grounding line migration in ice sheets using Elmer/ICE (v8.3). Gong Cheng, Per Lötstedt, and Lina von Sydow. In Geoscientific Model Development, volume 13, pp 2245-2258, 2020. (DOI, Fulltext).
21. Parameter sensitivity analysis of dynamic ice sheet models — numerical computations. Gong Cheng and Per Lötstedt. In The Cryosphere, volume 14, pp 673-691, 2020. (DOI, Fulltext).
22. A level-set multigrid technique for nonlinear diffusion in the numerical simulation of marble degradation under chemical pollutants. A. Coco, M. Semplice, and Stefano Serra-Capizzano. In Applied Mathematics and Computation, volume 386, Elsevier BV, 2020. (DOI, External link).
23. Numerical Simulations of Marble Sulfation. Armando Coco, Marco Donatelli, Matteo Semplice, and Stefano Serra-Capizzano. In Mathematical Modeling in Cultural Heritage, volume 41 of Springer INdAM Series, pp 107-122, Springer International Publishing, 2020. (DOI, External link).
24. PDE-constrained optimization: Matrix structures and preconditioners. Ivo Dravins and Maya Neytcheva. In Large-Scale Scientific Computing, volume 11958 of Lecture Notes in Computer Science (LNCS), pp 315-323, 2020. (DOI).
25. A stable discontinuous Galerkin method for the perfectly matched layer for elastodynamics in first order form. Kenneth Duru, Leonhard Rannabauer, Alice-Agnes Gabriel, Gunilla Kreiss, and Michael Bader. In Numerische Mathematik, volume 146, number 4, pp 729-782, 2020. (DOI).
26. Bayesian epidemiological modeling over high-resolution network data. Stefan Engblom, Robin Eriksson, and Stefan Widgren. In Epidemics, volume 32, Elsevier BV, 2020. (DOI, Fulltext, fulltext:print).
27. Developing the First Intensity Prediction Equation Based on the Environmental Scale Intensity: A Case Study from Strong Normal-Faulting Earthquakes in the Italian Apennines. Maria Francesca Ferrario, Franz Livio, Stefano Serra-Capizzano, and Alessandro M. Michetti. In Seismological Research Letters, volume 91, number 5, pp 2611-2623, Seismological Society of America (SSA), 2020. (DOI, External link).
28. NURBS in isogeometric discretization methods: A spectral analysis. Carlo Garoni, Carla Manni, Stefano Serra-Capizzano, and Hendrik Speleers. In Numerical Linear Algebra with Applications, volume 27, number 6, Wiley, 2020. (DOI, External link).
29. Existence result for the coupling of shallow water and Borda–Carnot equations with Riemann data. Mouhamadou Samsidy Goudiaby and Gunilla Kreiss. In Journal of Hyperbolic Differential Equations, volume 17, number 01, pp 185-212, 2020. (DOI).
30. "Mature" to Doubt: Using Ethical Theories for Role Modeling in Computing Education. Virginia Grande and Kristina von Hausswolff. In 2020 IEEE Frontiers in Education Conference (FIE), Frontiers in Education Conference, 2020. (DOI).
31. Hierarchical algorithm for the reaction–diffusion master equation. Stefan Hellander and Andreas Hellander. In Journal of Chemical Physics, volume 152, number 3, 2020. (DOI, Fulltext).
32. An investigation of global radial basis function collocation methods applied to Helmholtz problems. Elisabeth Larsson and Ulrika Sundin. In Dolomites Research Notes on Approximation, volume 13, pp 65-85, Padova University Press, 2020. (DOI, Fulltext, fulltext:print).
33. Efficient iterative solvers for a complex valued two-by-two block linear system with application to parabolic optimal control problems. Zhao-Zheng Liang, Owe Axelsson, and Guo-Feng Zhang. In Applied Numerical Mathematics, volume 152, pp 422-445, 2020. (DOI).
34. Flash X-ray diffraction imaging in 3D: a proposed analysis pipeline. Jing Liu, Stefan Engblom, and Carl Nettelblad. In Journal of the Optical Society of America A, volume 37, number 10, pp 1673-1686, 2020. (DOI).
35. An efficient finite difference method for the shallow water equations. Lukas Lundgren and Ken Mattsson. In Journal of Computational Physics, volume 422, Elsevier BV, 2020. (DOI).
36. Impact of Force Function Formulations on the Numerical Simulation of Centre-Based Models.. Sonja Mathias, Adrien Coulier, Anass Bouchnita, and Andreas Hellander. In Bulletin of Mathematical Biology, volume 82, number 10, Springer Nature, 2020. (DOI, Fulltext, fulltext:print).
37. A high order method for pricing of financial derivatives using radial basis function generated finite differences. Slobodan Milovanovi? and Lina von Sydow. In Mathematics and Computers in Simulation, volume 174, pp 205-217, 2020. (DOI).
38. Computation of Asymptotic Spectral Distributions for Sequences of Grid Operators. S. V. Morozov, Stefano Serra-Capizzano, and E. E. Tyrtyshnikov. In Computational Mathematics and Mathematical Physics, volume 60, number 11, pp 1761-1777, Springer, 2020. (DOI).
39. Multiscale approach for magnetization dynamics: unraveling exotic magnetic states of matter. Édgar Méndez, Mikhail Poluektov, Gunilla Kreiss, Olle Eriksson, and Manuel Pereiro. In Physical Review Research, volume 2, number 1, 2020. (DOI, Fulltext, fulltext:print).
40. Regularity of almost periodic solutions of Poisson equation. Murtazo Nazarov and Èrgash Muhamadiev. In Ufa Mathematical Journal, volume 12, number 2, pp 97-107, 2020. (DOI).
41. Differentiated Assessments for Advanced Courses that Reveal Issues with Prerequisite Skills: A Design Investigation. Greg L. Nelson, Filip Stromback, Ari Korhonen, Marjahan Begum, Ben Blamey, Karen H. Jin, Violetta Lonati, Bonnie MacKellar, and Mattia Monga. In ITICSE-WGR'20: Proceedings Of The Working Group Reports On Innovation And Technology In Computer Science Education, pp 75-129, Association for Computing Machinery (ACM), 2020. (DOI).
42. On using a zero lower bound on the physical density in material distribution topology optimization. Quoc Khanh Nguyen, Stefano Serra-Capizzano, and Eddie Wadbro. In Computer Methods in Applied Mechanics and Engineering, volume 359, ELSEVIER SCIENCE SA, 2020. (DOI).
43. Spectral analysis of Pk Finite Element matrices in the case of Friedrichs–Keller triangulations via Generalized Locally Toeplitz technology. Ryma Imene Rahla, Stefano Serra-Capizzano, and Cristina Tablino-Possio. In Numerical Linear Algebra with Applications, volume 27, number 4, Wiley, 2020. (DOI, External link).
44. Initialization of a Disease Transmission Model. Håkan Runvik, Alexander Medvedev, Robin Eriksson, and Stefan Engblom. In IFAC PapersOnline, pp 839-844, Elsevier BV, 2020. (DOI, Fulltext, fulltext:print).
45. High-order cut discontinuous Galerkin methods with local time stepping for acoustics. Svenja Schoeder, Simon Sticko, Gunilla Kreiss, and Martin Kronbichler. In International Journal for Numerical Methods in Engineering, volume 121, number 13, pp 2979-3003, 2020. (DOI).
46. Towards Smart e-Infrastructures, A Community Driven Approach Based on Real Datasets. Prashant Singh, Mona Mohamed Elamin, and Salman Toor. In Proceedings of the 2020 IEEE Green Technologies Conference (GreenTech), IEEE Green Technologies Conference, pp 109-114, 2020. (DOI).
47. Smart Resource Management for Data Streaming using an Online Bin-packing Strategy. Oliver Stein, Ben Blamey, Johan Karlsson, Alan Sabirsh, Ola Spjuth, Andreas Hellander, and Salman Toor. In 2020 IEEE International Conference on Big Data (Big Data), pp 2207-2216, 2020. (DOI).
48. High-order cut finite elements for the elastic wave equation. Simon Sticko, Gustav Ludvigsson, and Gunilla Kreiss. In Advances in Computational Mathematics, volume 46, number 3, 2020. (DOI, Fulltext).
49. A monotonic optimization approach for solving strictly quasiconvex multiobjective programming problems. Tran Ngoc Thang, Vijender Kumar Solanki, Tuan Anh Dao, Nguyen Thi Ngoc Anh, and Pham Van Hai. In Journal of Intelligent & Fuzzy Systems, volume 38, pp 6053-6063, 2020. (DOI).
50. Bootstrapping Weakly Supervised Segmentation-free Word Spotting through HMM-based Alignment. Tomas Wilkinson and Carl Nettelblad. In 2020 17th International Conference on Frontiers in Handwriting Recognition (ICFHR), pp 49-54, 2020. (DOI).
51. A numerical simulation for Darcy–Forchheimer flow of nanofluid by a rotating disk with partial slip effects. Malik Zaka Ullah, Stefano Serra-Capizzano, and Dumitru Baleanu. In Frontiers in Physics, volume 7, 2020. (DOI, Fulltext).
52. Copying Can Be Good: How Students View Imitation as a Tool in Learning to Program. Carol Zander, Lynda Thomas, Jan Erik Moström, and Anna Eckerdal. In 2020 IEEE Frontiers in Education Conference (FIE), IEEE Frontiers in Education Conference, Institute of Electrical and Electronics Engineers (IEEE), 2020. (DOI).
53. Learning to program hands-on: a controlled study. Kristina von Hausswolff, Anna Eckerdal, and Michael Thuné. In Proceedings of the 20th Koli Calling International Conference on Computing Education Research November 2020 November 2020, pp 1-10, 2020. (DOI).
54. Social dimensions in the lab session when novices learn to program. Kristina von Hausswolff and Maria Weurlander. In 2020 IEEE Frontiers in Education Conference (FIE), Frontiers in Education Conference, 2020. (DOI).
55. Numerical Ross Recovery for Diffusion Processes Using a PDE Approach. Lina von Sydow and Johan Waldén. In Applied Mathematical Finance, pp 46-66, 2020. (DOI).

2019

1. Order-preserving interpolation for summation-by-parts operators at nonconforming grid interfaces. Martin Almquist, Siyang Wang, and Jonatan Werpers. In SIAM Journal on Scientific Computing, volume 41, pp A1201-A1227, 2019. (DOI).
2. Temporal upscaling in micromagnetism via heterogeneous multiscale methods. Doghonay Arjmand, Stefan Engblom, and Gunilla Kreiss. In Journal of Computational and Applied Mathematics, volume 345, pp 99-113, 2019. (DOI).
3. Parallelization and scalability analysis of inverse factorization using the chunks and tasks programming model. Anton G. Artemov, Elias Rudberg, and Emanuel H. Rubensson. In Parallel Computing, volume 89, pp 102548:1-12, 2019. (DOI).
4. A note on preconditioning methods for time-periodic eddy current optimal control problems. Owe Axelsson and Zhao-Zheng Liang. In Journal of Computational and Applied Mathematics, volume 352, pp 262-277, 2019. (DOI).
5. Parameter modified versions of preconditioning and iterative inner product free refinement methods for two-by-two block matrices. Owe Axelsson and Zhao-Zheng Liang. In Linear Algebra and its Applications, volume 582, pp 403-429, 2019. (DOI).
6. Preconditioned iterative solution methods for linear systems arising in PDE-constrained optimization. Owe Axelsson, Maya Neytcheva, and János Karátson. In Robust and Constrained Optimization: Methods and Applications, Mathematics Research Developments, pp 85-148, Nova Science Publishers, Inc., Hauppauge, New York, 2019.
7. Mathematical modeling reveals that the administration of EGF can promote the elimination of lymph node metastases by PD-1/PD-L1 blockade. Mohamed Amine Benchaib, Anass Bouchnita, Vitaly Volpert, and Abdelkader Makhoute. In Frontiers in Bioengineering and Biotechnology, volume 7, 2019. (DOI, Fulltext).
8. Preconditioned smoothers for the Full Approximation Scheme for the RANS equations. Philipp Birken, Jonathan Bull, and Antony Jameson. In Journal of Scientific Computing, volume 78, pp 995-1022, 2019. (DOI, Fulltext).
9. Adapting the secretary hiring problem for optimal hot–cold tier placement under top-<em>K</em> workloads. Ben Blamey, Fredrik Wrede, Johan Karlsson, Andreas Hellander, and Salman Toor. In Proc. 19th International Symposium on Cluster, Cloud, and Grid Computing, pp 576-583, IEEE Computer Society, Los Alamitos, CA, 2019. (DOI).
10. A 3D multiscale model to explore the role of EGFR overexpression in tumourigenesis. Anass Bouchnita, Stefan Hellander, and Andreas Hellander. In Bulletin of Mathematical Biology, volume 81, pp 2323-2344, 2019. (DOI, Fulltext).
11. A multiscale model of platelet-fibrin thrombus growth in the flow. Anass Bouchnita and Vitaly Volpert. In Computers & Fluids, volume 184, pp 10-20, 2019. (DOI).
12. On-demand virtual research environments using microservices. Marco Capuccini, Anders Larsson, Matteo Carone, Jon Ander Novella, Noureddin Sadawi, Jianliang Gao, Salman Toor, and Ola Spjuth. In PeerJ Computer Science, volume 5, 2019. (DOI, Fulltext).
13. Spectral and convergence analysis of the discrete ALIF method. Antonio Cicone, Carlo Garoni, and Stefano Serra-Capizzano. In Linear Algebra and its Applications, volume 580, pp 62-95, 2019. (DOI).
14. A merged tuning of binary and ternary Loop's subdivision. Marco Donatelli, Paola Novara, Lucia Romani, Stefano Serra-Capizzano, and Debora Sesana. In Computer Aided Geometric Design, volume 69, pp 27-44, 2019. (DOI).
15. On energy stable discontinuous Galerkin spectral element approximations of the perfectly matched layer for the wave equation. Kenneth Duru, Alice-Agnes Gabriel, and Gunilla Kreiss. In Computer Methods in Applied Mechanics and Engineering, volume 350, pp 898-937, 2019. (DOI, Fulltext).
16. A matrix-less and parallel interpolation–extrapolation algorithm for computing the eigenvalues of preconditioned banded symmetric Toeplitz matrices. Sven-Erik Ekström and Carlo Garoni. In Numerical Algorithms, volume 80, pp 819-848, 2019. (DOI, Fulltext).
17. Eigenvalue isogeometric approximations based on B-splines: Tools and results. Sven-Erik Ekström and Stefano Serra-Capizzano. In Advanced Methods for Geometric Modeling and Numerical Simulation, pp 57-76, Springer, 2019. (DOI).
18. Stochastic simulation of pattern formation in growing tissue: A multilevel approach. Stefan Engblom. In Bulletin of Mathematical Biology, volume 81, pp 3010-3023, 2019. (DOI, Fulltext).
19. The eigenvalue distribution of special 2-by-2 block matrix-sequences with applications to the case of symmetrized Toeplitz structures. Paola Ferrari, Isabella Furci, Sean Hon, Mohammad Ayman Mursaleen, and Stefano Serra-Capizzano. In SIAM Journal on Matrix Analysis and Applications, volume 40, pp 1066-1086, 2019. (DOI).
20. Block GLT sequences: Matrix functions and engineering application. Carlo Garoni and Stefano Serra-Capizzano. In The Electronic Journal of Linear Algebra, volume 35, pp 204-222, 2019. (DOI, Fulltext).
21. Block generalized locally Toeplitz sequences: Topological construction, spectral distribution results, and star-algebra structure. Carlo Garoni, Stefano Serra-Capizzano, and Debora Sesana. In Structured Matrices in Numerical Linear Algebra: Analysis, Algorithms and Applications, pp 59-79, Springer, 2019. (DOI).
22. Block locally Toeplitz sequences: Construction and properties. Carlo Garoni, Stefano Serra-Capizzano, and Debora Sesana. In Structured Matrices in Numerical Linear Algebra: Analysis, Algorithms and Applications, pp 25-58, Springer, 2019. (DOI).
23. Multilevel Generalized Locally Toeplitz Sequences: An Overview and an Example of Application. Carlo Garoni and Stefano Serra-Capizzano. In International Conference on Numerical Analysis and Applied Mathematics (ICNAAM-2018), volume 2116 of AIP Conference Proceedings, 2019. (DOI).
24. Symbol-based analysis of finite element and isogeometric B-spline discretizations of eigenvalue problems: Exposition and review. Carlo Garoni, Hendrik Speleers, Sven-Erik Ekström, Alessandro Reali, Stefano Serra-Capizzano, and Thomas J. R. Hughes. In Archives of Computational Methods in Engineering, volume 26, pp 1639-1690, 2019. (DOI).
25. Spatial lymphocyte dynamics in lymph nodes predicts the cytotoxic T cell frequency needed for HIV infection control. Dmitry Grebennikov, Anass Bouchnita, Vitaly Volpert, Nikolay Bessonov, Andreas Meyerhans, and Gennady Bocharov. In Frontiers in Immunology, volume 10, 2019. (DOI, Fulltext).
26. Why high-performance modelling and simulation for big data applications matters. Clemens Grelck, Ewa Niewiadomska-Szynkiewicz, Marco Aldinucci, Andrea Bracciali, and Elisabeth Larsson. In High-Performance Modelling and Simulation for Big Data Applications, pp 1-35, Springer, 2019. (DOI, Fulltext).
27. Saul Abarbanel; Half a century of scientific work. Bertil Gustafsson. In Journal of Scientific Computing, volume 81, pp 1124-1135, 2019. (DOI, Fulltext).
28. The presence and impact of reference bias on population genomic studies of prehistoric human populations. Torsten Günther and Carl Nettelblad. In PLOS Genetics, volume 15, number 7, 2019. (DOI, Fulltext).
29. Poroelastic effects destabilize mildly rate-strengthening friction to generate stable slow slip pulses. Elias R. Heimisson, Eric M. Dunham, and Martin Almquist. In Journal of the mechanics and physics of solids, volume 130, pp 262-279, 2019. (DOI, External link).
30. A note on the spectral distribution of symmetrized Toeplitz sequences. Sean Hon, Mohammad Ayman Mursaleen, and Stefano Serra-Capizzano. In Linear Algebra and its Applications, volume 579, pp 32-50, 2019. (DOI).
31. New model for pricing quanto credit default swaps. Andrey Itkin, Victor Shcherbakov, and Alexander Veygman. In International Journal of Theoretical and Applied Finance, volume 22, number 3, 2019. (DOI).
32. SWEEP: Accelerating scientific research through scalable serverless workflows. Aji John, Kristiina Ausmees, Kathleen Muenzen, Catherine Kuhn, and Amanda Tan. In Companion Proc. 12th International Conference on Utility and Cloud Computing, pp 43-50, ACM Press, New York, 2019. (DOI).
33. Multigrid for matrix-free high-order finite element computations on graphics processors. Martin Kronbichler and Karl Ljungkvist. In ACM Transactions on Parallel Computing, volume 6, number 1, pp 2:1-32, 2019. (DOI).
34. Performance of an OO compute kernel on the JVM: Revisiting Java as a language for scientific computing applications. Malin Källén and Tobias Wrigstad. In Proc. 16th ACM SIGPLAN International Conference on Managed Programming Languages and Runtimes, pp 144-156, ACM Press, New York, 2019. (DOI).
35. Parallelization of hierarchical matrix algorithms for electromagnetic scattering problems. Elisabeth Larsson, Afshin Zafari, Marco Righero, M. Alessandro Francavilla, Giorgio Giordanengo, Francesca Vipiana, Giuseppe Vecchi, Christoph Kessler, Corinne Ancourt, and Clemens Grelck. In High-Performance Modelling and Simulation for Big Data Applications, pp 36-68, Springer, 2019. (DOI, Fulltext).
36. Exposing inter-process information for efficient PDES of spatial stochastic systems on multicores. Jonatan Lindén, Pavol Bauer, Stefan Engblom, and Bengt Jonsson. In ACM Transactions on Modeling and Computer Simulation, volume 29, number 2, pp 11:1-25, 2019. (DOI).
37. Supervised classification methods for flash X-ray single particle diffraction imaging. Jing Liu, Gijs van der Schot, and Stefan Engblom. In Optics Express, volume 27, pp 3884-3899, 2019. (DOI, Fulltext).
38. The linear noise approximation for spatially dependent biochemical networks. Per Lötstedt. In Bulletin of Mathematical Biology, volume 81, pp 2873-2901, 2019. (DOI, Fulltext).
39. Thermal conductivity of firn at Lomonosovfonna, Svalbard, derived from subsurface temperature measurements. Sergey Marchenko, Gong Cheng, Per Lötstedt, Veijo Pohjola, Rickard Pettersson, Ward van Pelt, and Carleen Reijmer. In The Cryosphere, volume 13, pp 1843-1859, 2019. (DOI, Fulltext).
40. Isogeometric analysis for 2D and 3D curl–div problems: Spectral symbols and fast iterative solvers. Mariarosa Mazza, Carla Manni, Ahmed Ratnani, Stefano Serra-Capizzano, and Hendrik Speleers. In Computer Methods in Applied Mechanics and Engineering, volume 344, pp 970-997, 2019. (DOI).
41. Spectral analysis and spectral symbol for the 2D curl–curl (stabilized) operator with applications to the related iterative solutions. Mariarosa Mazza, Ahmed Ratnani, and Stefano Serra-Capizzano. In Mathematics of Computation, volume 88, number 317, pp 1155-1188, 2019. (DOI).
42. Linear scaling pseudo Fermi-operator expansion for fractional occupation. Susan M. Mniszewski, Romain Perriot, Emanuel H. Rubensson, Christian F. A. Negre, Marc J. Cawkwell, and Anders M. N. Niklasson. In Journal of Chemical Theory and Computation, volume 15, pp 190-200, 2019. (DOI).
43. A library for wall-modelled large-eddy simulation based on OpenFOAM technology. Timofey Mukha, Saleh Rezaeiravesh, and Mattias Liefvendahl. In Computer Physics Communications, volume 239, pp 204-224, 2019. (DOI).
44. Container-based bioinformatics with Pachyderm. Jon Ander Novella, Payam Emami Khoonsari, Stephanie Herman, Daniel Whitenack, Marco Capuccini, Joachim Burman, Kim Kultima, and Ola Spjuth. In Bioinformatics, volume 35, pp 839-846, 2019. (DOI, Fulltext).
45. Tail distribution and extreme quantile estimation using non-parametric approaches. Imen Rached and Elisabeth Larsson. In High-Performance Modelling and Simulation for Big Data Applications, pp 69-87, Springer, 2019. (DOI, Fulltext).
46. Systematic study of accuracy of wall-modeled large eddy simulation using uncertainty quantification techniques. Saleh Rezaeiravesh, Timofey Mukha, and Mattias Liefvendahl. In Computers & Fluids, volume 185, pp 34-58, 2019. (DOI).
47. Inferential statistics in computing education research: A methodological review. Kate Sanders, Judy Sheard, Brett A. Becker, Anna Eckerdal, Sally Hamouda, and Simon. In Proc. 15th International Computing Education Research Conference, pp 177-185, ACM Press, New York, 2019. (DOI).
48. Higher order cut finite elements for the wave equation. Simon Sticko and Gunilla Kreiss. In Journal of Scientific Computing, volume 80, pp 1867-1887, 2019. (DOI, Fulltext).
49. Analysis of students’ learning of computer programming in a computer laboratory context. Michael Thuné and Anna Eckerdal. In European Journal of Engineering Education, volume 44, pp 769-786, 2019. (DOI, Fulltext).
50. What controls the initial peak of an air-gun source signature?. Leighton M. Watson, Jonatan Werpers, and Eric M. Dunham. In Geophysics, volume 84, number 2, pp P27-P45, 2019. (DOI).
51. SimInf: An R package for data-driven stochastic disease spread simulations. Stefan Widgren, Pavol Bauer, Robin Eriksson, and Stefan Engblom. In Journal of Statistical Software, volume 91, number 12, pp 1-42, 2019. (DOI, Fulltext).
52. SimInf for spatio-temporal data-driven modeling of African swine fever in Swedish wildboar. Stefan Widgren, Thomas Rosendal, Stefan Engblom, and Karl Ståhl. In GeoVet 2019: Novel spatio-temporal approaches in the era of Big Data, 2019. (DOI, Fulltext).
53. Smart computational exploration of stochastic gene regulatory network models using human-in-the-loop semi-supervised learning. Fredrik Wrede and Andreas Hellander. In Bioinformatics, volume 35, pp 5199-5206, 2019. (DOI).
54. Tsunami Wavefield Reconstruction and Forecasting Using the Ensemble Kalman Filter. Yuyun Yang, Eric M. Dunham, Guillaume Barnier, and Martin Almquist. In Geophysical Research Letters, volume 46, number 2, pp 853-860, 2019. (DOI, External link).
55. DuctTeip: An efficient programming model for distributed task-based parallel computing. Afshin Zafari, Elisabeth Larsson, and Martin Tillenius. In Parallel Computing, volume 90, 2019. (DOI, fulltext:postprint).
56. Copying can be good: How instructors use imitation in teaching programming. Carol Zander, Anna Eckerdal, Robert McCartney, Jan Erik Moström, Kate Sanders, and Lynda Thomas. In Proc. 24th Conference on Innovation and Technology in Computer Science Education, pp 450-456, ACM Press, New York, 2019. (DOI).
57. BENCHOP–SLV: The BENCHmarking project in Option Pricing – Stochastic and local volatility problems. Lina von Sydow, Slobodan Milovanovi?, Elisabeth Larsson, Karel In't Hout, Magnus Wiktorsson, Cornelis W. Oosterlee, Victor Shcherbakov, Maarten Wyns, Alvaro Leitao, Shashi Jain, Tinne Haentjens, and Johan Waldén. In International Journal of Computer Mathematics, volume 96, pp 1910-1923, 2019. (DOI, Fulltext).

2018

1. Are the eigenvalues of preconditioned banded symmetric Toeplitz matrices known in almost closed form?. Fayyaz Ahmad, Eman S. Al-Aidarous, Dina A. Alrehaili, Sven-Erik Ekström, Isabella Furci, and Stefano Serra-Capizzano. In Numerical Algorithms, volume 78, pp 867-893, 2018. (DOI, Fulltext).
2. Forward deterministic pricing of options using Gaussian radial basis functions. Jamal Amani Rad, Josef Höök, Elisabeth Larsson, and Lina von Sydow. In Journal of Computational Science, volume 24, pp 209-217, 2018. (DOI, fulltext:postprint).
3. An equation-free approach for second order multiscale hyperbolic problems in non-divergence form. Doghonay Arjmand and Gunilla Kreiss. In Communications in Mathematical Sciences, volume 16, pp 2317-2343, 2018. (DOI).
4. Atomistic-continuum multiscale modelling of magnetisation dynamics at non-zero temperature. Doghonay Arjmand, Mikhail Poluektov, and Gunilla Kreiss. In Advances in Computational Mathematics, volume 44, pp 1119-1151, 2018. (DOI, Fulltext).
5. BAMSI: a multi-cloud service for scalable distributed filtering of massive genome data. Kristiina Ausmees, Aji John, Salman Z. Toor, Andreas Hellander, and Carl Nettelblad. In BMC Bioinformatics, volume 19, pp 240:1-11, 2018. (DOI, Fulltext).
6. An efficient preconditioning method for state box-constrained optimal control problems. Owe Axelsson, Maya Neytcheva, and Anders Ström. In Journal of Numerical Mathematics, volume 26, pp 185-207, 2018. (DOI).
7. Parallel solution methods and preconditioners for evolution equations. Owe Axelsson, Maya Neytcheva, and Zhao-Zheng Liang. In Mathematical Modelling and Analysis, volume 23, pp 287-308, 2018. (DOI, Fulltext).
8. Efficient Green's function reaction dynamics (GFRD) simulations for diffusion-limited, reversible reactions. Zahedeh Bashardanesh and Per Lötstedt. In Journal of Computational Physics, volume 357, pp 78-99, 2018. (DOI).
9. Multiscale modelling via split-step methods in neural firing. Pavol Bauer, Stefan Engblom, Sanja Mikulovic, and Aleksandar Senek. In Mathematical and Computer Modelling of Dynamical Systems, volume 24, pp 426-445, 2018. (DOI, Fulltext).
10. Space–time FE–DG discretization of the anisotropic diffusion equation in any dimension: The spectral symbol. Pietro Benedusi, Carlo Garoni, Rolf Krause, Xiaozhou Li, and Stefano Serra-Capizzano. In SIAM Journal on Matrix Analysis and Applications, volume 39, pp 1383-1420, 2018. (DOI).
11. Spectral analysis of finite-dimensional approximations of 1<em>d</em> waves in non-uniform grids. Davide Bianchi and Stefano Serra-Capizzano. In Calcolo, volume 55, pp 47:1-28, 2018. (DOI).
12. Uniform convergence of V-cycle multigrid algorithms for two-dimensional fractional Feynman–Kac equation. Minghua Chen, Weihua Deng, and Stefano Serra-Capizzano. In Journal of Scientific Computing, volume 74, pp 1034-1059, 2018. (DOI).
13. Anisotropic radial basis function methods for continental size ice sheet simulations. Gong Cheng and Victor Shcherbakov. In Journal of Computational Physics, volume 372, pp 161-177, 2018. (DOI).
14. Pathwise error bounds in multiscale variable splitting methods for spatial stochastic kinetics. Augustin Chevallier and Stefan Engblom. In SIAM Journal on Numerical Analysis, volume 56, pp 469-498, 2018. (DOI).
15. Orchestral: a lightweight framework for parallel simulations of cell–cell communication. Adrien Coulier and Andreas Hellander. In Proc. 14th International Conference on e-Science, pp 168-176, IEEE Computer Society, Los Alamitos, CA, 2018. (DOI).
16. A multi-criteria optimization model for emission-concerned multi-depot vehicle routing problem with heterogeneous fleet. Tuan Anh Dao and Anh Nguyen-Thi-Ngoc. In 2018 International Conference on Applied Smart Systems (ICASS), Institute of Electrical and Electronics Engineers (IEEE), 2018. (DOI).
17. Spectral analysis and multigrid methods for finite volume approximations of space-fractional diffusion equations. Marco Donatelli, Mariarosa Mazza, and Stefano Serra-Capizzano. In SIAM Journal on Scientific Computing, volume 40, pp A4007-A4039, 2018. (DOI).
18. Staggered discontinuous Galerkin methods for the incompressible Navier–Stokes equations: Spectral analysis and computational results. Michael Dumbser, Francesco Fambri, Isabella Furci, Mariarosa Mazza, Stefano Serra-Capizzano, and Maurizio Tavelli. In Numerical Linear Algebra with Applications, volume 25, pp e2151:1-31, 2018. (DOI).
19. Are the eigenvalues of banded symmetric Toeplitz matrices known in almost closed form?. Sven-Erik Ekström, Carlo Garoni, and Stefano Serra-Capizzano. In Experimental Mathematics, volume 27, pp 478-487, 2018. (DOI, fulltext:postprint).
20. Are the eigenvalues of the B-spline isogeometric analysis approximation of ?<em>?u</em> = <em>?u</em> known in almost closed form?. Sven-Erik Ekström, Isabella Furci, Carlo Garoni, Carla Manni, Stefano Serra-Capizzano, and Hendrik Speleers. In Numerical Linear Algebra with Applications, volume 25, pp e2198:1-34, 2018. (DOI).
21. Eigenvalues and eigenvectors of banded Toeplitz matrices and the related symbols. Sven-Erik Ekström and Stefano Serra-Capizzano. In Numerical Linear Algebra with Applications, volume 25, pp e2137:1-17, 2018. (DOI).
22. Exact formulæ and matrix-less eigensolvers for block banded symmetric Toeplitz matrices. Sven-Erik Ekström, Isabella Furci, and Stefano Serra-Capizzano. In BIT Numerical Mathematics, volume 58, pp 937-968, 2018. (DOI, Fulltext).
23. Mesoscopic modeling of random walk and reactions in crowded media. Stefan Engblom, Per Lötstedt, and Lina Meinecke. In Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, volume 98, pp 033304:1-16, 2018. (DOI).
24. Scalable population-level modelling of biological cells incorporating mechanics and kinetics in continuous time. Stefan Engblom, Daniel B. Wilson, and Ruth E. Baker. In Royal Society Open Science, volume 5, pp 180379:1-17, 2018. (DOI, Fulltext).
25. Towards Bayesian parametrization of national scale epidemics. Robin Eriksson, Stefan Engblom, and Stefan Widgren. In MATHMOD 2018 Extended Abstracts, pp 65-66, ARGESIM Publisher, Vienna, Austria, 2018. (DOI, Fulltext).
26. Block generalized locally Toeplitz sequences: From the theory to the applications. Carlo Garoni, Mariarosa Mazza, and Stefano Serra-Capizzano. In Axioms, volume 7, pp 49:1-29, 2018. (DOI, Fulltext).
27. Generalized locally Toeplitz sequences: A spectral analysis tool for discretized differential equations. Carlo Garoni and Stefano Serra-Capizzano. In Splines and PDEs: From Approximation Theory to Numerical Linear Algebra, volume 2219 of Lecture Notes in Mathematics, pp 161-236, Springer, 2018. (DOI).
28. Spectral distribution results beyond the algebra generated by variable-coefficient Toeplitz sequences: The GLT approach. Carlo Garoni and Stefano Serra-Capizzano. In Journal of Fourier Analysis and Applications, volume 24, pp 506-524, 2018. (DOI).
29. Effective slip over partially filled microcavities and its possible failure. Zhouyang Ge, Hanna Holmgren, Martin Kronbichler, Luca Brandt, and Gunilla Kreiss. In Physical Review Fluids, volume 3, pp 054201:1-17, 2018. (DOI).
30. A general high order two-dimensional panel method. Anders Goude and Stefan Engblom. In Applied Mathematical Modelling, volume 60, pp 1-17, 2018. (DOI).
31. Ground surface temperature reconstruction for the last 500 years obtained from permafrost temperatures observed in the Share Stelvio borehole, Italian Alps. Mauro Guglielmin, Marco Donatelli, Matteo Semplice, and Stefano Serra Capizzano. In Climate of the Past, volume 14, pp 709-724, 2018. (DOI, Fulltext).
32. Stabilized equal low-order finite elements in ice sheet modeling: accuracy and robustness. Christian Helanow and Josefin Ahlkrona. In Computational Geosciences, volume 22, pp 951-974, 2018. (DOI, Fulltext).
33. The Kolmogorov forward fractional partial differential equation for the CGMY-process with applications in option pricing. Lars Josef Höök, Gustav Ludvigsson, and Lina von Sydow. In Computers and Mathematics with Applications, volume 76, pp 2330-2344, 2018. (DOI).
34. Generalized Newton multi-step iterative methods GMN_<em>p,m</em> for solving systems of nonlinear equations. Salima Kouser, Shafiq Ur Rehman, Fayyaz Ahmad, Stefano Serra-Capizzano, Malik Zaka Ullah, Ali Saleh Alshomrani, Hani M. Aljahdali, Shamshad Ahmad, and Shahid Ahmad. In International Journal of Computer Mathematics, volume 95, pp 881-897, 2018. (DOI).
35. A fast massively parallel two-phase flow solver for microfluidic chip simulation. Martin Kronbichler, Ababacar Diagne, and Hanna Holmgren. In The international journal of high performance computing applications, volume 32, pp 266-287, 2018. (DOI).
36. On-the-fly computation of frontal orbitals in density matrix expansions. Anastasia Kruchinina, Elias Rudberg, and Emanuel H. Rubensson. In Journal of Chemical Theory and Computation, volume 14, pp 139-153, 2018. (DOI).
37. A robust structured preconditioner for time-harmonic parabolic optimal control problems. Zhao-Zheng Liang, Owe Axelsson, and Maya Neytcheva. In Numerical Algorithms, volume 79, pp 575-596, 2018. (DOI, Fulltext).
38. Fine-grained local dynamic load balancing in PDES. Jonatan Lindén, Pavol Bauer, Stefan Engblom, and Bengt Jonsson. In Proc. 6th ACM SIGSIM Conference on Principles of Advanced Discrete Simulation, pp 201-212, ACM Press, New York, 2018. (DOI).
39. Assessing uncertainties in x-ray single-particle three-dimensional reconstruction. Jing Liu, Stefan Engblom, and Carl Nettelblad. In Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, volume 98, pp 013303:1-12, 2018. (DOI).
40. High-order numerical methods for 2D parabolic problems in single and composite domains. Gustav Ludvigsson, Kyle R. Steffen, Simon Sticko, Siyang Wang, Qing Xia, Yekaterina Epshteyn, and Gunilla Kreiss. In Journal of Scientific Computing, volume 76, pp 812-847, 2018. (DOI, Fulltext).
41. An improved projection method. Ken Mattsson and Pelle Olsson. In Journal of Computational Physics, volume 372, pp 349-372, 2018. (DOI).
42. Boundary optimized diagonal-norm SBP operators. Ken Mattsson, Martin Almquist, and Edwin van der Weide. In Journal of Computational Physics, volume 374, pp 1261-1266, 2018. (DOI).
43. Compatible diagonal-norm staggered and upwind SBP operators. Ken Mattsson and Ossian O'Reilly. In Journal of Computational Physics, volume 352, pp 52-75, 2018. (DOI).
44. Simulation of acoustic and flexural-gravity waves in ice-covered oceans. Ken Mattsson, Eric M. Dunham, and Jonatan Werpers. In Journal of Computational Physics, volume 373, pp 230-252, 2018. (DOI).
45. Ventral hippocampal OLM cells control type 2 theta oscillations and response to predator odor. Sanja Mikulovic, Carlos Ernesto Restrepo, Samer Siwani, Pavol Bauer, Stefano Pupe Johann, Adriano B. L. Tort, Klas Kullander, and Richardson N. Leão. In Nature Communications, volume 9, pp 3638:1-15, 2018. (DOI, Fulltext).
46. Radial basis function generated finite differences for option pricing problems. Slobodan Milovanovi? and Lina von Sydow. In Computers and Mathematics with Applications, volume 75, pp 1462-1481, 2018. (DOI).
47. Eddylicious: A Python package for turbulent inflow generation. Timofey Mukha and Mattias Liefvendahl. In SoftwareX, volume 7, pp 112-114, 2018. (DOI, Fulltext).
48. Effect of wall-stress model and mesh-cell topology on the predictive accuracy of LES for wall-bounded flows. Timofey Mukha, Mattias Johansson, and Mattias Liefvendahl. In Proc. 7th European Conference on Computational Fluid Dynamics, European Community on Computional Methods in Applied Sciences (ECCOMAS), 2018.
49. Turbulucid: A Python package for post-processing of fluid flow simulations. Timofey Mukha. In Journal of Open Research Software, volume 6, 2018. (DOI, Fulltext).
50. Multidimensional performance and scalability analysis for diverse applications based on system monitoring data. Maya Neytcheva, Sverker Holmgren, Jonathan R. Bull, Ali Dorostkar, Anastasia Kruchinina, Dmitry Nikitenko, Nina Popova, Pavel Shvets, Alexey Teplov, Vadim Voevodin, and Vladimir Voevodin. In Parallel Processing and Applied Mathematics: Part I, volume 10777 of Lecture Notes in Computer Science, pp 417-431, Springer, 2018. (DOI).
51. A statistical approach to detect protein complexes at X-ray free electron laser facilities. Alberto Pietrini, Johan Bielecki, Nicusor Timneanu, Max F. Hantke, Jakob Andreasson, N. Duane Loh, Daniel S. D. Larsson, Sébastien Boutet, Janos Hajdu, Filipe R. N. C. Maia, and Carl Nettelblad. In Communications Physics, volume 1, pp 92:1-11, 2018. (DOI, Fulltext).
52. Using convex optimization of autocorrelation with constrained support and windowing for improved phase retrieval accuracy. Alberto Pietrini and Carl Nettelblad. In Optics Express, volume 26, pp 24422-24443, 2018. (DOI, Fulltext).
53. Coupling atomistic and continuum modelling of magnetism. Mikhail Poluektov, Olle Eriksson, and Gunilla Kreiss. In Computer Methods in Applied Mechanics and Engineering, volume 329, pp 219-253, 2018. (DOI).
54. A-priori study of wall modeling in large eddy simulation. Saleh Rezaeiravesh, Timofey Mukha, and Mattias Liefvendahl. In Proc. 7th European Conference on Computational Fluid Dynamics, European Community on Computional Methods in Applied Sciences (ECCOMAS), 2018.
55. Assessment of uncertainties in hot-wire anemometry and oil-film interferometry measurements for wall-bounded turbulent flows. Saleh Rezaeiravesh, Ricardo Vinuesa, Mattias Liefvendahl, and Philipp Schlatter. In European journal of mechanics. B, Fluids, volume 72, pp 57-73, 2018. (DOI).
56. Effect of grid resolution on large eddy simulation of wall-bounded turbulence. Saleh Rezaeiravesh and Mattias Liefvendahl. In Physics of fluids, volume 30, pp 055106:1-22, 2018. (DOI).
57. Ergo: An open-source program for linear-scaling electronic structure calculations. Elias Rudberg, Emanuel H. Rubensson, Pawel Salek, and Anastasia Kruchinina. In SoftwareX, volume 7, pp 107-111, 2018. (DOI, Fulltext).
58. High-fidelity sound propagation in a varying 3D atmosphere. Ylva Rydin, Ken Mattsson, and Jonatan Werpers. In Journal of Scientific Computing, volume 77, pp 1278-1302, 2018. (DOI, Fulltext).
59. Radial basis function methods for the Rosenau equation and other higher order PDEs. Ali Safdari-Vaighani, Elisabeth Larsson, and Alfa Heryudono. In Journal of Scientific Computing, volume 75, pp 1555-1580, 2018. (DOI, Fulltext).
60. How Statistics Are Used in Computing Education Research. Kate Sanders, Sally Hamouda, Brett A. Becker, Anna Eckerdal, Robert Mccartney, Judy Sheard, and Simon. In ITiCSE 2018: Proceedings of the 23rd Annual ACM Conference on Innovation and Technology in Computer Science Education, pp 381-381, Association for Computing Machinery (ACM), 2018. (DOI).
61. Hyperparameter optimization for approximate Bayesian computation. Prashant Singh and Andreas Hellander. In Proc. 50th Winter Simulation Conference, pp 1718-1729, IEEE, Piscataway, NJ, 2018. (DOI).
62. Learning surrogate models of document image quality metrics for automated document image processing. Prashant Singh, Ekta Vats, and Anders Hast. In Proc. 13th IAPR International Workshop on Document Analysis Systems, pp 67-72, IEEE, 2018. (DOI).
63. Multi-objective optimization driven construction of uniform priors for likelihood-free parameter inference. Prashant Singh and Andreas Hellander. In Proc. 32nd European Simulation and Modelling Conference, pp 22-27, EUROSIS, 2018.
64. A finite difference method for earthquake sequences in poroelastic solids. Kim Torberntsson, Vidar Stiernström, Ken Mattsson, and Eric M. Dunham. In Computational Geosciences, volume 22, pp 1351-1370, 2018. (DOI).
65. HarmonicIO: Scalable data stream processing for scientific datasets. Preechakorn Torruangwatthana, Håkan Wieslander, Ben Blamey, Andreas Hellander, and Salman Toor. In Proc. 11th International Conference on Cloud Computing, pp 879-882, IEEE Computer Society, Los Alamitos, CA, 2018. (DOI).
66. An improved high order finite difference method for non-conforming grid interfaces for the wave equation. Siyang Wang. In Journal of Scientific Computing, volume 77, pp 775-792, 2018. (DOI, Fulltext).
67. Convergence of finite difference methods for the wave equation in two space dimensions. Siyang Wang, Anna Nissen, and Gunilla Kreiss. In Mathematics of Computation, volume 87, number 314, pp 2737-2763, 2018. (DOI).
68. Spatio-temporal modelling of verotoxigenic <em>Escherichia coli</em> O157 in cattle in Sweden: exploring options for control. Stefan Widgren, Stefan Engblom, Ulf Emanuelson, and Ann Lindberg. In Veterinary research (Print), volume 49, pp 78:1-13, 2018. (DOI, Fulltext).
69. TaskUniVerse: A Task-Based Unified Interface for Versatile Parallel Execution. Afshin Zafari. In Parallel Processing and Applied Mathematics: Part I, volume 10777 of Lecture Notes in Computer Science, pp 169-184, Springer, 2018. (DOI, fulltext:postprint).
70. Special issue-Computational and algorithmic finance. Karel in't Hout, Andrey Itkin, Lina von Sydow, and Jari Toivanen. In Journal of Computational Science, volume 24, pp 180-181, Elsevier BV, 2018. (DOI).
71. Dynamically coupling full Stokes and shallow shelf approximation for marine ice sheet flow using Elmer/Ice (v8.3). Eef C. H. van Dongen, Nina Kirchner, Martin B. van Gijzen, Roderik S. W. van de Wal, Thomas Zwinger, Gong Cheng, Per Lötstedt, and Lina von Sydow. In Geoscientific Model Development, volume 11, pp 4563-4576, 2018. (DOI, Fulltext).
72. Measuring programming knowledge in a research context. Kristina von Hausswolff and Anna Eckerdal. In Proc. 48th ASEE/IEEE Frontiers in Education Conference, IEEE Press, Piscataway, NJ, 2018. (DOI).
73. Practical thinking while programming: A Deweyan approach to knowledge in Computer Science. Kristina von Hausswolff. In Proc. 14th International Computing Education Research Conference, pp 268-269, ACM Press, New York, 2018. (DOI).

2017

1. A meshfree approach to non-Newtonian free surface ice flow: Application to the Haut Glacier d'Arolla. Josefin Ahlkrona and Victor Shcherbakov. In Journal of Computational Physics, volume 330, pp 633-649, 2017. (DOI).
2. Higher order derivative-free iterative methods with and without memory for systems of nonlinear equations. Fayyaz Ahmad, Fazlollah Soleymani, Farhad Khaksar Haghani, and Stefano Serra-Capizzano. In Applied Mathematics and Computation, volume 314, pp 199-211, 2017. (DOI).
3. Multilevel local time-stepping methods of Runge–Kutta-type for wave equations. Martin Almquist and Michaela Mehlin. In SIAM Journal on Scientific Computing, volume 39, pp A2020-A2048, 2017. (DOI).
4. A hybrid method for the imputation of genomic data in livestock populations. Roberto Antolín, Carl Nettelblad, Gregor Gorjanc, Daniel Money, and John M. Hickey. In Genetics Selection Evolution, volume 49, 2017. (DOI, Fulltext).
5. An explicit Hermite–Taylor method for the Schrödinger equation. Daniel Appelö, Gunilla Kreiss, and Siyang Wang. In Communications in Computational Physics, volume 21, pp 1207-1230, 2017. (DOI).
6. Estimates for the upscaling error in heterogeneous multiscale methods for wave propagation problems in locally periodic media. Doghonay Arjmand and Olof Runborg. In Multiscale Modeling & simulation, volume 15, pp 948-976, 2017. (DOI).
7. A preconditioner for optimal control problems, constrained by Stokes equation with a time-harmonic control. Owe Axelsson, Shiraz Farouq, and Maya Neytcheva. In Journal of Computational and Applied Mathematics, volume 310, pp 5-18, 2017. (DOI, fulltext:postprint).
8. Comparison of preconditioned Krylov subspace iteration methods for PDE-constrained optimization problems: Stokes control. Owe Axelsson, Shiraz Farouq, and Maya Neytcheva. In Numerical Algorithms, volume 74, pp 19-37, 2017. (DOI, fulltext:postprint).
9. Numerical solution of the viscous flow past a cylinder with a non-global yet spectrally convergent meshless collocation method. Francisco Bernal, Alfa R. H. Heryudono, and Elisabeth Larsson. In Spectral and High Order Methods for Partial Differential Equations: ICOSAHOM 2016, volume 119 of Lecture Notes in Computational Science and Engineering, pp 495-507, Springer, 2017. (DOI).
10. Optimizing a multigrid Runge–Kutta smoother for variable-coefficient convection–diffusion equations. Daniele Bertaccini, Marco Donatelli, Fabio Durastante, and Stefano Serra-Capizzano. In Linear Algebra and its Applications, volume 533, pp 507-535, 2017. (DOI).
11. A fast direct solver for the advection–diffusion equation using low-rank approximation of the Green's function. Jonathan R. Bull. In Spectral and High Order Methods for Partial Differential Equations: ICOSAHOM 2016, volume 119 of Lecture Notes in Computational Science and Engineering, pp 423-435, Springer, 2017. (DOI).
12. Exploration of Toeplitz-like matrices with unbounded symbols is not a purely academic journey. Albrecht Böttcher, Carlo Garoni, and Stefano Serra-Capizzano. In Sbornik. Mathematics, volume 208, number 11, pp 1602-1627, 2017. (DOI).
13. Large-scale virtual screening on public cloud resources with Apache Spark. Marco Capuccini, Laeeq Ahmed, Wesley Schaal, Erwin Laure, and Ola Spjuth. In Journal of Cheminformatics, volume 9, 2017. (DOI, Fulltext).
14. Accurate and stable time stepping in ice sheet modeling. Gong Cheng, Per Lötstedt, and Lina von Sydow. In Journal of Computational Physics, volume 329, pp 29-47, 2017. (DOI, fulltext:postprint).
15. Vascular sprouts induce local attraction of proangiogenic neutrophils. Gustaf Christoffersson, Jalal Lomei, Paul O'Callaghan, Johan Kreuger, Stefan Engblom, and Mia Phillipson. In Journal of Leukocyte Biology, volume 102, pp 741-751, 2017. (DOI).
16. Backstepping stabilization of the linearized Saint-Venant–Exner model. Ababacar Diagne, Mamadou Diagne, Shuxia Tang, and Miroslav Krstic. In Automatica, volume 76, pp 345-354, 2017. (DOI).
17. Control of shallow waves of two unmixed fluids by backstepping. Mamadou Diagne, Shu-Xia Tang, Ababacar Diagne, and Miroslav Krstic. In Annual Reviews in Control, volume 44, pp 211-225, 2017. (DOI).
18. Function-based block multigrid strategy for a two-dimensional linear elasticity-type problem. Marco Donatelli, Ali Dorostkar, Mariarosa Mazza, Maya Neytcheva, and Stefano Serra-Capizzano. In Computers and Mathematics with Applications, volume 74, pp 1015-1028, 2017. (DOI).
19. Symbol-based multigrid methods for Galerkin B-spline isogeometric analysis. Marco Donatelli, Carlo Garoni, Carla Manni, Stefano Serra-Capizzano, and Hendrik Speleers. In SIAM Journal on Numerical Analysis, volume 55, pp 31-62, 2017. (DOI).
20. Multiscale methods for problems with complex geometry. Daniel Elfverson, Mats G. Larson, and Axel Målqvist. In Computer Methods in Applied Mechanics and Engineering, volume 321, pp 103-123, 2017. (DOI).
21. Data-driven computational disease spread modeling: from measurement to parametrization and control. Stefan Engblom and Stefan Widgren. In Disease Modelling and Public Health: Part A, volume 36 of Handbook of Statistics, pp 305-328, Elsevier, 2017. (DOI).
22. Multiscale simulation of stochastic reaction–diffusion networks. Stefan Engblom, Andreas Hellander, and Per Lötstedt. In Stochastic Processes, Multiscale Modeling, and Numerical Methods for Computational Cellular Biology, pp 55-79, Springer, 2017. (DOI).
23. Stability and strong convergence for spatial stochastic kinetics. Stefan Engblom. In Stochastic Processes, Multiscale Modeling, and Numerical Methods for Computational Cellular Biology, pp 109-125, Springer, 2017. (DOI).
24. Generalized Locally Toeplitz Sequences: Theory and Applications: Volume I. Carlo Garoni and Stefano Serra-Capizzano. Springer, 2017. (DOI).
25. Lusin theorem, GLT sequences and matrix computations: An application to the spectral analysis of PDE discretization matrices. Carlo Garoni, Carla Manni, Stefano Serra-Capizzano, Debora Sesana, and Hendrik Speleers. In Journal of Mathematical Analysis and Applications, volume 446, pp 365-382, 2017. (DOI).
26. Spectral analysis and spectral symbol of matrices in isogeometric Galerkin methods. Carlo Garoni, Carla Manni, Stefano Serra-Capizzano, Debora Sesana, and Hendrik Speleers. In Mathematics of Computation, volume 86, number 305, pp 1343-1373, 2017. (DOI).
27. The theory of generalized locally Toeplitz sequences: a review, an extension, and a few representative applications. Carlo Garoni and Stefano Serra-Capizzano. In Large Truncated Toeplitz Matrices, Toeplitz Operators, and Related Topics, volume 259 of Operator Theory: Advances and Applications, pp 353-394, Springer, 2017. (DOI).
28. The role of chromatin density in cell population heterogeneity during stem cell differentiation. Mahdi Golkaram, Jiwon Jang, Stefan Hellander, Kenneth S. Kosik, and Linda R. Petzold. In Scientific Reports, volume 7, pp 13307:1-11, 2017. (DOI, Fulltext).
29. Robustness analysis of spatiotemporal models in the presence of extrinsic fluctuations. Andreas Hellander, Jan Klosa, Per Lötstedt, and Shev MacNamara. In SIAM Journal on Applied Mathematics, volume 77, pp 1157-1183, 2017. (DOI).
30. Contrast independent localization of multiscale problems. Fredrik Hellman and Axel Målqvist. In Multiscale Modeling & simulation, volume 15, pp 1325-1355, 2017. (DOI).
31. Cost-aware application development and management using CLOUD-METRIC. Alieu Jallow, Andreas Hellander, and Salman Toor. In Proc. 7th International Conference on Cloud Computing and Services Science, pp 515-522, SciTePress, Setúbal, Portugal, 2017. (DOI).
32. Oriented clonal cell dynamics enables accurate growth and shaping of vertebrate cartilage. Marketa Kaucka, Tomas Zikmund, Marketa Tesarova, Daniel Gyllborg, Andreas Hellander, Josef Jaros, Jozef Kaiser, Julian Petersen, Bara Szarowska, Phillip T. Newton, Vyacheslav Dyachuk, Lei Li, Hong Qian, Anne-Sofie Johansson, Yuji Mishina, Josh Currie, Elly M. Tanaka, Alek Erickson, Andrew Dudley, Hjalmar Brismar, Paul Southam, Enrico Coen, Min Chen, Lee S. Weinstein, Ales Hampl, Ernest Arenas, Andrei S. Chagin, Kaj Fried, and Igor Adameyko. In eLIFE, volume 6, 2017. (DOI, Fulltext).
33. A phase-field microscale enhancement for macro models of capillary-driven contact point dynamics. Martin Kronbichler and Gunilla Kreiss. In Journal of Computational Multiphase Flows, volume 9, pp 114-126, 2017. (DOI, Fulltext).
34. A least squares radial basis function partition of unity method for solving PDEs. Elisabeth Larsson, Victor Shcherbakov, and Alfa Heryudono. In SIAM Journal on Scientific Computing, volume 39, pp A2538-A2563, 2017. (DOI).
35. Airway-tree segmentation in subjects with acute respiratory distress syndrome. Kristína Lidayová, Duván Alberto Gómez Betancur, Hans Frimmel, Marcela Hernández Hoyos, Maciej Orkisz, and Örjan Smedby. In Image Analysis: Part II, volume 10270 of Lecture Notes in Computer Science, pp 76-87, Springer, 2017. (DOI).
36. Classification of cross-sections for vascular skeleton extraction using convolutional neural networks. Kristína Lidayová, Anindya Gupta, Hans Frimmel, Ida-Maria Sintorn, Ewert Bengtsson, and Örjan Smedby. In Medical Image Understanding and Analysis, volume 723 of Communications in Computer and Information Science, pp 182-194, Springer, 2017. (DOI).
37. Improved centerline tree detection of diseased peripheral arteries with a cascading algorithm for vascular segmentation. Kristína Lidayová, Hans Frimmel, Ewert Bengtsson, and Örjan Smedby. In Journal of Medical Imaging, volume 4, pp 024004:1-11, 2017. (DOI).
38. Exposing inter-process information for efficient parallel discrete event simulation of spatial stochastic systems. Jonatan Lindén, Pavol Bauer, Stefan Engblom, and Bengt Jonsson. In Proc. 5th ACM SIGSIM Conference on Principles of Advanced Discrete Simulation, pp 53-64, ACM Press, New York, 2017. (DOI).
39. Matrix-free finite-element computations on graphics processors with adaptively refined unstructured meshes. Karl Ljungkvist. In Proc. 25th High Performance Computing Symposium, pp 1-12, The Society for Modeling and Simulation International, San Diego, CA, 2017.
40. A flexible computational framework using R and Map-Reduce for permutation tests of massive genetic analysis of complex traits. Behrang Mahjani, Salman Toor, Carl Nettelblad, and Sverker Holmgren. In IEEE/ACM Transactions on Computational Biology & Bioinformatics, volume 14, pp 381-392, 2017. (DOI).
41. A high-order accurate embedded boundary method for first order hyperbolic equations. Ken Mattsson and Martin Almquist. In Journal of Computational Physics, volume 334, pp 255-279, 2017. (DOI).
42. Diagonal-norm upwind SBP operators. Ken Mattsson. In Journal of Computational Physics, volume 335, pp 283-310, 2017. (DOI).
43. Folk pedagogy and the geek gene: Geekiness quotient. Robert McCartney, Jonas Boustedt, Anna Eckerdal, Kate Sanders, and Carol Zander. In Proc. 48th SIGCSE Technical Symposium on Computer Science Education, pp 405-410, ACM Press, New York, 2017. (DOI).
44. Excluded volume effects in on- and off-lattice reaction–diffusion models. Lina Meinecke and Markus Eriksson. In IET Systems Biology, volume 11, pp 55-64, 2017. (DOI).
45. Multiscale modeling of diffusion in a crowded environment. Lina Meinecke. In Bulletin of Mathematical Biology, volume 79, pp 2672-2695, 2017. (DOI).
46. Examining manual and semi-automated methods of analysing MOOC data for computing education. Michael Morgan, Matthew Butler, Neena Thota, Aletta Nylén, Anna Eckerdal, and Päivi Kinnunen. In Proc. 17th International Conference on Computing Education Research: Koli Calling, pp 153-157, ACM Press, New York, 2017. (DOI).
47. The generation of turbulent inflow boundary conditions using precursor channel flow simulations. Timofey Mukha and Mattias Liefvendahl. In Computers & Fluids, volume 156, pp 21-33, 2017. (DOI).
48. Numerical investigation of a viscous regularization of the Euler equations by entropy viscosity. Murtazo Nazarov and Aurélien Larcher. In Computer Methods in Applied Mechanics and Engineering, volume 317, pp 128-152, 2017. (DOI, fulltext:postprint).
49. Artifact reduction in the CSPAD detectors used for LCLS experiments. Alberto Pietrini and Carl Nettelblad. In Journal of Synchrotron Radiation, volume 24, pp 1092-1097, 2017. (DOI).
50. Folk Pedagogy: Nobody doesn't like active learning. Kate Sanders, Jonas Boustedt, Anna Eckerdal, Robert McCartney, and Carol Zander. In Proc. 13th International Computing Education Research Conference, pp 145-154, ACM Press, New York, 2017. (DOI).
51. Multiscale stochastic neuron modeling – with applications in deep brain stimulation. Aleksandar Senek and Stefan Engblom. In Proc. Summer Simulation Multiconference: 2017, pp 38:1-5, Society for Computer Simulation International, San Diego, CA, 2017. (Paper).
52. Automated line-based sequential sampling and modeling algorithm for EMC near-field scanning. Prashant Singh, Tim Claeys, Guy A. E. Vandenbosch, and Davy Pissoort. In IEEE transactions on electromagnetic compatibility (Print), volume 59, pp 704-709, 2017. (DOI).
53. Constrained multi-objective antenna design optimization using surrogates. Prashant Singh, Marco Rossi, Ivo Couckuyt, Dirk Deschrijver, Hendrik Rogier, and Tom Dhaene. In International journal of numerical modelling, volume 30, pp e2248:1-5, 2017. (DOI).
54. Multi-objective geometry optimization of a gas cyclone using triple-fidelity co-Kriging surrogate models. Prashant Singh, Ivo Couckuyt, Khairy Elsayed, Dirk Deschrijver, and Tom Dhaene. In Journal of Optimization Theory and Applications, volume 175, pp 172-193, 2017. (DOI, Fulltext).
55. Surrogate assisted model reduction for stochastic biochemical reaction networks. Prashant Singh and Andreas Hellander. In Proc. 49th Winter Simulation Conference, pp 1773-1783, IEEE, Piscataway, NJ, 2017. (DOI).
56. In the liminal space: Software design as a threshold skill. Lynda Thomas, Jonas Boustedt, Anna Eckerdal, Robert McCartney, Jan Erik Moström, Kate Sanders, and Carol Zander. In Practice and Evidence of the Scholarship of Teaching and Learning in Higher Education, volume 12, pp 333-351, 2017. (Article).
57. Student software designs at the undergraduate midpoint. Lynda Thomas, Carol Zander, Chris Loftus, and Anna Eckerdal. In ITiCSE '17: Proceedings of the 2017 ACM Conference on Innovation and Technology in Computer Science Education, pp 34-39, Association for Computing Machinery (ACM), 2017. (DOI).
58. SNIC Science Cloud (SSC): A national-scale cloud infrastructure for Swedish academia. Salman Toor, Mathias Lindberg, Ingemar Fällman, Andreas Vallin, Olof Mohill, Pontus Freyhult, Linus Nilsson, Martin Agback, Lars Viklund, Henric Zazzi, Ola Spjuth, Marco Capuccini, Joakim Möller, Donal Murtagh, and Andreas Hellander. In Proc. 13th International Conference on e-Science, pp 219-227, IEEE Computer Society, Los Alamitos, CA, 2017. (DOI).
59. Automatic document image binarization using Bayesian optimization. Ekta Vats, Anders Hast, and Prashant Singh. In Proc. 4th International Workshop on Historical Document Imaging and Processing, pp 89-94, ACM Press, New York, 2017. (DOI).
60. Convergence of summation-by-parts finite difference methods for the wave equation. Siyang Wang and Gunilla Kreiss. In Journal of Scientific Computing, volume 71, pp 219-245, 2017. (DOI, Fulltext).
61. A higher order multi-step iterative method for computing the numerical solution of systems of nonlinear equations associated with nonlinear PDEs and ODEs. Malik Zaka Ullah, Stefano Serra-Capizzano, Fayyaz Ahmad, Arshad Mahmood, and Eman S. Al-Aidarous. In Journal of Computational Analysis And Applications, volume 22, pp 445-461, 2017.
62. Micromechanics of semicrystalline polymers: Towards quantitative predictions. Johannes A. W. van Dommelen, Mikhail Poluektov, Amin Sedighiamiri, and Leon E. Govaert. In Mechanics research communications, volume 80, pp 4-9, 2017. (DOI).
63. Hands-on in computer programming education. Kristina von Hausswolff. In Proc. 13th International Computing Education Research Conference, pp 279-280, ACM Press, New York, 2017. (DOI).
64. Practical thinking in programming education. Kristina von Hausswolff. In Proc. 17th International Conference on Computing Education Research: Koli Calling, pp 203-204, ACM Press, New York, 2017. (DOI).

2016

1. GillesPy: A Python package for stochastic model building and simulation. John H. Abel, Brian Drawert, Andreas Hellander, and Linda R. Petzold. In IEEE Life Sciences Letters, volume 2, pp 35-38, 2016. (DOI, Fulltext).
2. Dynamically coupling the non-linear Stokes equations with the shallow ice approximation in glaciology: Description and first applications of the ISCAL method. Josefin Ahlkrona, Per Lötstedt, Nina Kirchner, and Thomas Zwinger. In Journal of Computational Physics, volume 308, pp 1-19, 2016. (DOI, fulltext:postprint).
3. A family of iterative methods for solving systems of nonlinear equations having unknown multiplicity. Fayyaz Ahmad, Stefano Serra-Capizzano, Malik Zaka Ullah, and A. Saleh Al-Fhaid. In Algorithms, volume 9, pp 5:1-10, 2016. (DOI, Fulltext).
4. A time dependent approach for removing the cell boundary error in elliptic homogenization problems. Doghonay Arjmand and Olof Runborg. In Journal of Computational Physics, volume 314, pp 206-227, 2016. (DOI).
5. Comparison of preconditioned Krylov subspace iteration methods for PDE-constrained optimization problems: Poisson and convection–diffusion control. Owe Axelsson, Shiraz Farouq, and Maya Neytcheva. In Numerical Algorithms, volume 73, pp 631-663, 2016. (DOI, fulltext:postprint).
6. Feature evaluation for handwritten character recognition with regressive and generative Hidden Markov Models. Kalyan Ram Ayyalasomayajula, Carl Nettelblad, and Anders Brun. In Advances in Visual Computing: Part I, volume 10072 of Lecture Notes in Computer Science, pp 278-287, Springer, 2016. (DOI, fulltext:postprint).
7. Fast event-based epidemiological simulations on national scales. Pavol Bauer, Stefan Engblom, and Stefan Widgren. In The international journal of high performance computing applications, volume 30, pp 438-453, 2016. (DOI, Fulltext).
8. A note on terminology in multigrid methods. Philipp Birken, Jonathan Bull, and Antony Jameson. In Proceedings in Applied Mathematics and Mechanics: PAMM, volume 16, number 1, pp 721-722, 2016. (DOI).
9. A study of multigrid smoothers used in compressible CFD based on the convection diffusion equation. Philipp Birken, Jonathan Bull, and Antony Jameson. In Proc. 7th ECCOMAS Congress, pp 2648-2663, European Community on Computional Methods in Applied Sciences (ECCOMAS), 2016. (DOI).
10. Highly accurate stability-preserving optimization of the Zener viscoelastic model, with application to wave propagation in the presence of strong attenuation. Emilie Blanc, Dimitri Komatitsch, Emmanuel Chaljub, Bruno Lombard, and Zhinan Xie. In Geophysical Journal International, volume 205, pp 427-439, 2016. (DOI).
11. Mesoscopic modeling of stochastic reaction–diffusion kinetics in the subdiffusive regime. Emilie Blanc, Stefan Engblom, Andreas Hellander, and Per Lötstedt. In Multiscale Modeling & simulation, volume 14, pp 668-707, 2016. (DOI).
12. A matrix-free Legendre spectral method for initial–boundary value problems. Bernd Brumm and Emil Kieri. In Electronic Transactions on Numerical Analysis, volume 45, pp 283-304, 2016. (Article).
13. A direct solver for the advection–diffusion equation using Green's functions and low-rank approximation. Jonathan Bull, Stefan Engblom, and Sverker Holmgren. In Proc. 7th ECCOMAS Congress, pp 7302-7316, European Community on Computional Methods in Applied Sciences (ECCOMAS), 2016. (DOI).
14. Explicit filtering and exact reconstruction of the sub-filter stresses in large eddy simulation. Jonathan R. Bull and Antony Jameson. In Journal of Computational Physics, volume 306, pp 117-136, 2016. (DOI, fulltext:postprint).
15. Hummingbird: monitoring and analyzing flash X-ray imaging experiments in real time. Benedikt J. Daurer, Max F. Hantke, Carl Nettelblad, and Filipe R. N. C. Maia. In Journal of applied crystallography, volume 49, pp 1042-1047, 2016. (DOI, Fulltext).
16. Optimal preconditioning for image deblurring with Anti-Reflective boundary conditions. Pietro Dell'Acqua, Marco Donatelli, Stefano Serra-Capizzano, Debora Sesana, and Cristina Tablino-Possio. In Linear Algebra and its Applications, volume 502, pp 159-185, 2016. (DOI).
17. Output feedback stabilization of the linearized bilayer Saint-Venant model. Ababacar Diagne, Shuxia Tang, Mamadou Diagne, and Miroslav Krstic. In Proc. 9th Dynamic Systems and Control Conference, ASME Press, New York, 2016. (DOI).
18. State feedback stabilization of the linearized bilayer Saint-Venant model. Ababacar Diagne, Shuxia Tang, Mamadou Diagne, and Miroslav Krstic. In , volume 49:8 of IFAC-PapersOnLine, pp 130-135, 2016. (DOI).
19. Multigrid methods for cubic spline solution of two point (and 2D) boundary value problems. Marco Donatelli, Matteo Molteni, Vincenzo Pennati, and Stefano Serra-Capizzano. In Applied Numerical Mathematics, volume 104, pp 15-29, 2016. (DOI).
20. Preconditioned HSS method for large multilevel block Toeplitz linear systems via the notion of matrix-valued symbol. Marco Donatelli, Carlo Garoni, Mariarosa Mazza, Stefano Serra-Capizzano, and Debora Sesana. In Numerical Linear Algebra with Applications, volume 23, pp 83-119, 2016. (DOI).
21. Spectral analysis and spectral symbol of matrices in isogeometric collocation methods. Marco Donatelli, Carlo Garoni, Carla Manni, Stefano Serra-Capizzano, and Hendrik Speleers. In Mathematics of Computation, volume 85, number 300, pp 1639-1680, 2016. (DOI).
22. Spectral analysis and structure preserving preconditioners for fractional diffusion equations. Marco Donatelli, Mariarosa Mazza, and Stefano Serra-Capizzano. In Journal of Computational Physics, volume 307, pp 262-279, 2016. (DOI).
23. Spectral analysis of coupled PDEs and of their Schur complements via Generalized Locally Toeplitz sequences in 2D. Ali Dorostkar, Maya Neytcheva, and Stefano Serra-Capizzano. In Computer Methods in Applied Mechanics and Engineering, volume 309, pp 74-105, 2016. (DOI).
24. MOLNs: A cloud platform for interactive, reproducible, and scalable spatial stochastic computational experiments in systems biology using PyURDME. Brian Drawert, Michael Trogdon, Salman Toor, Linda Petzold, and Andreas Hellander. In SIAM Journal on Scientific Computing, volume 38, pp C179-C202, 2016. (DOI).
25. Stochastic Simulation Service: Bridging the gap between the computational expert and the biologist. Brian Drawert, Andreas Hellander, Ben Bales, Debjani Banerjee, Giovanni Bellesia, Bernie J. Daigle Jr., Geoffrey Douglas, Mengyuan Gu, Anand Gupta, Stefan Hellander, Chris Horuk, Dibyendu Nath, Aviral Takkar, Sheng Wu, Per Lötstedt, Chandra Krintz, and Linda R. Petzold. In PloS Computational Biology, volume 12, number 12, 2016. (DOI, Fulltext).
26. A multilevel Monte Carlo method for computing failure probabilities. Daniel Elfverson, Fredrik Hellman, and Axel Målqvist. In SIAM/ASA Journal on Uncertainty Quantification, volume 4, pp 312-330, 2016. (DOI).
27. Fast Matlab compatible sparse assembly on multicore computers. Stefan Engblom and Dimitar Lukarski. In Parallel Computing, volume 56, pp 1-17, 2016. (DOI).
28. Preconditioned Metropolis sampling as a strategy to improve efficiency in posterior exploration. Stefan Engblom and Vikram Sunkara. In , volume 49:26 of IFAC-PapersOnLine, pp 89-94, 2016. (DOI).
29. Multilevel Monte Carlo methods for computing failure probability of porous media flow systems. Fritjof Fagerlund, Fredrik Hellman, Axel Målqvist, and Auli Niemi. In Advances in Water Resources, volume 94, pp 498-509, 2016. (DOI, fulltext:postprint).
30. The theory of locally Toeplitz sequences: a review, an extension, and a few representative applications. Carlo Garoni and Stefano Serra-Capizzano. In Boletín de la Sociedad Matematica Mexicana, volume 22, pp 529-565, 2016. (DOI).
31. Evaluation of the deflated preconditioned CG method to solve bubbly and porous media flow problems on GPU and CPU. Rohit Gupta, Dimitar Lukarski, Martin B. van Gijzen, and Cornelis Vuik. In International Journal for Numerical Methods in Fluids, volume 80, pp 666-683, 2016. (DOI).
32. Multiscale mixed finite elements. Fredrik Hellman, Patrick Henning, and Axel Målqvist. In Discrete and Continuous Dynamical Systems. Series S, volume 9, pp 1269-1298, 2016. (DOI, fulltext:postprint).
33. Preconditioning for radial basis function partition of unity methods. Alfa Heryudono, Elisabeth Larsson, Alison Ramage, and Lina von Sydow. In Journal of Scientific Computing, volume 67, pp 1089-1109, 2016. (DOI, fulltext:postprint).
34. Efficient computation of the quasi likelihood function for discretely observed diffusion processes. Lars Josef Höök and Erik Lindström. In Computational Statistics & Data Analysis, volume 103, pp 426-437, 2016. (DOI).
35. A method to measure moisture induced swelling properties of a single wood cell. Thomas Joffre, Per Isaksson, Pierre J. J. Dumont, Sabine Rolland du Roscoat, Simon Sticko, Laurent Orgéas, and E. Kristofer Gamstedt. In Experimental mechanics, volume 56, pp 723-733, 2016. (DOI).
36. Analysis of neural crest-derived clones reveals novel aspects of facial development. Marketa Kaucka, Evgeny Ivashkin, Daniel Gyllborg, Tomas Zikmund, Marketa Tesarova, Jozef Kaiser, Meng Xie, Julian Petersen, Vassilis Pachnis, Silvia K. Nicolis, Tian Yu, Paul Sharpe, Ernest Arenas, Hjalmar Brismar, Hans Blom, Hans Clevers, Ueli Suter, Andrei S. Chagin, Kaj Fried, Andreas Hellander, and Igor Adameyko. In Science Advances, volume 2, number 8, pp e1600060:1-16, 2016. (DOI, Fulltext).
37. Discretized dynamical low-rank approximation in the presence of small singular values. Emil Kieri, Christian Lubich, and Hanna Walach. In SIAM Journal on Numerical Analysis, volume 54, pp 1020-1038, 2016. (DOI, fulltext:print).
38. Shallow ice approximation, second order shallow ice approximation, and full Stokes models: A discussion of their roles in palaeo-ice sheet modelling and development. Nina Kirchner, Josefin Ahlkrona, Evan J. Gowan, Per Lötstedt, James M. Lea, Riko Noormets, Lina von Sydow, Julian A. Dowdeswell, and Toby Benham. In Quaternary Science Reviews, volume 135, pp 103-114, 2016. (DOI).
39. An adaptive interpolation scheme for molecular potential energy surfaces. Markus Kowalewski, Elisabeth Larsson, and Alfa Heryudono. In Journal of Chemical Physics, volume 145, pp 084104:1-10, 2016. (DOI).
40. Analysis of stretched grids as buffer zones in simulations of wave propagation. Gunilla Kreiss, Benjamin Krank, and Gunilla Efraimsson. In Applied Numerical Mathematics, volume 107, pp 1-17, 2016. (DOI, fulltext:postprint).
41. Parameterless stopping criteria for recursive density matrix expansions. Anastasia Kruchinina, Elias Rudberg, and Emanuel H. Rubensson. In Journal of Chemical Theory and Computation, volume 12, pp 5788-5802, 2016. (DOI).
42. Fast vascular skeleton extraction algorithm. Kristína Lidayová, Hans Frimmel, Chunliang Wang, Ewert Bengtsson, and Örjan Smedby. In Pattern Recognition Letters, volume 76, pp 67-75, 2016. (DOI).
43. High-fidelity numerical simulation of solitons in the nerve axon. Ken Mattsson and Jonatan Werpers. In Journal of Computational Physics, volume 305, pp 793-816, 2016. (DOI, fulltext:postprint).
44. Why computing students learn on their own: Motivation for self-directed learning of computing. Robert McCartney, Jonas Boustedt, Anna Eckerdal, Kate Sanders, Lynda Thomas, and Carol Zander. In ACM Transactions on Computing Education, volume 16, number 1, pp 2:1-18, 2016. (DOI).
45. Analysis and design of jump coefficients in discrete stochastic diffusion models. Lina Meinecke, Stefan Engblom, Andreas Hellander, and Per Lötstedt. In SIAM Journal on Scientific Computing, volume 38, pp A55-A83, 2016. (DOI, fulltext:print).
46. Stochastic diffusion processes on Cartesian meshes. Lina Meinecke and Per Lötstedt. In Journal of Computational and Applied Mathematics, volume 294, pp 1-11, 2016. (DOI, fulltext:postprint).
47. Graph-based linear scaling electronic structure theory. Anders M. N. Niklasson, Susan M. Mniszewski, Christian F. A. Negre, Marc J. Cawkwell, Pieter J. Swart, Jamal Mohd-Yusof, Timothy C. Germann, Michael E. Wall, Nicolas Bock, Emanuel H. Rubensson, and Hristo Djidjev. In Journal of Chemical Physics, volume 144, pp 234101:1-8, 2016. (DOI, Fulltext).
48. Essential spectral equivalence via multiple step preconditioning and applications to ill conditioned Toeplitz matrices. Dimitrios Noutsos, Stefano Serra-Capizzano, and Paraskevas Vassalos. In Linear Algebra and its Applications, volume 491, pp 276-291, 2016. (DOI).
49. Micromechanical modeling of roll-to-roll processing of oriented polyethylene terephthalate films. Mikhail Poluektov, Johannes A. W. van Dommelen, Leon E. Govaert, Duncan H. MacKerron, and Marc G. D. Geers. In Journal of Applied Polymer Science, volume 133, number 18, pp 43384:1-11, 2016. (DOI).
50. Scale transitions in magnetisation dynamics. Mikhail Poluektov, Olle Eriksson, and Gunilla Kreiss. In Communications in Computational Physics, volume 20, pp 969-988, 2016. (DOI).
51. Solving systems of nonlinear equations when the nonlinearity is expensive. Sabahat Qasim, Zulifqar Ali, Fayyaz Ahmad, Stefano Serra-Capizzano, Malik Zaka Ullah, and Arshad Mahmood. In Computers and Mathematics with Applications, volume 71, pp 1464-1478, 2016. (DOI).
52. Constructing frozen Jacobian iterative methods for solving systems of nonlinear equations, associated with ODEs and PDEs using the homotopy method. Uswah Qasim, Zulifqar Ali, Fayyaz Ahmad, Stefano Serra-Capizzano, Malik Zaka Ullah, and Mir Asma. In Algorithms, volume 9, pp 18:1-17, 2016. (DOI, Fulltext).
53. On grid resolution requirements for LES of wall-bounded flows. Saleh Rezaeiravesh, Mattias Liefvendahl, and Christer Fureby. In Proc. 7th ECCOMAS Congress, pp 7454-7465, European Community on Computional Methods in Applied Sciences (ECCOMAS), 2016. (DOI).
54. Locality-aware parallel block-sparse matrix–matrix multiplication using the Chunks and Tasks programming model. Emanuel H. Rubensson and Elias Rudberg. In Parallel Computing, volume 57, pp 87-106, 2016. (DOI, fulltext:postprint).
55. Eigenvalue-eigenvector structure of Schoenmakers–Coffey matrices via Toeplitz technology and applications. Ernesto Salinelli, Stefano Serra-Capizzano, and Debora Sesana. In Linear Algebra and its Applications, volume 491, pp 138-160, 2016. (DOI).
56. Radial basis function partition of unity methods for pricing vanilla basket options. Victor Shcherbakov and Elisabeth Larsson. In Computers and Mathematics with Applications, volume 71, pp 185-200, 2016. (DOI, fulltext:postprint).
57. Radial basis function partition of unity operator splitting method for pricing multi-asset American options. Victor Shcherbakov. In BIT Numerical Mathematics, volume 56, pp 1401-1423, 2016. (DOI, fulltext:postprint).
58. A stabilized Nitsche cut element method for the wave equation. Simon Sticko and Gunilla Kreiss. In Computer Methods in Applied Mechanics and Engineering, volume 309, pp 364-387, 2016. (DOI).
59. High order finite difference methods for the wave equation with non-conforming grid interfaces. Siyang Wang, Kristoffer Virta, and Gunilla Kreiss. In Journal of Scientific Computing, volume 68, pp 1002-1028, 2016. (DOI).
60. Data-driven network modelling of disease transmission using complete population movement data: spread of VTEC O157 in Swedish cattle. Stefan Widgren, Stefan Engblom, Pavol Bauer, Jenny Frössling, Ulf Emanuelson, and Ann Lindberg. In Veterinary research (Print), volume 47, pp 81:1-17, 2016. (DOI, Fulltext).
61. Pricing of basket options using dimension reduction and adaptive finite differences in space, and discontinuous Galerkin in time. Lina von Sydow, Paria Ghafari, Erik Lehto, and Mats Wångersjö. In Numerical Mathematics and Advanced Applications: ENUMATH 2015, volume 112 of Lecture Notes in Computational Science and Engineering, pp 607-615, Springer, 2016. (DOI).

2015

1. Self-adaptive multiprecision preconditioners on multicore and manycore architectures. Hartwig Anzt, Dimitar Lukarski, Stanimire Tomov, and Jack Dongarra. In High Performance Computing for Computational Science – VECPAR 2014, volume 8969 of Lecture Notes in Computer Science, pp 115-123, Springer, 2015. (DOI).
2. Classical iterative methods. Owe Axelsson. In Encyclopedia of Applied and Computational Mathematics, pp 205-224, Springer, 2015. (DOI).
3. Numerical solution of the time-dependent Navier–Stokes equation for variable density–variable viscosity: Part I. Owe Axelsson, Xin He, and Maya Neytcheva. In Mathematical Modelling and Analysis, volume 20, pp 232-260, 2015. (DOI, fulltext:postprint).
4. Efficient inter-process synchronization for parallel discrete event simulation on multicores. Pavol Bauer, Jonatan Lindén, Stefan Engblom, and Bengt Jonsson. In Proc. 3rd ACM SIGSIM Conference on Principles of Advanced Discrete Simulation, pp 183-194, ACM Press, New York, 2015. (DOI).
5. Sensitivity estimation and inverse problems in spatial stochastic models of chemical kinetics. Pavol Bauer and Stefan Engblom. In Numerical Mathematics and Advanced Applications: ENUMATH 2013, volume 103 of Lecture Notes in Computational Science and Engineering, pp 519-527, Springer, 2015. (DOI).
6. Learning practice and theory in programming education: Students’ lived experience. Anders Berglund and Anna Eckerdal. In Proc. 3rd International Conference on Learning and Teaching in Computing and Engineering, pp 180-186, IEEE Computer Society, Los Alamitos, CA, 2015. (DOI, fulltext:preprint).
7. Learning to program: A discussion on the interplay of theory and practice. Anders Berglund and Anna Eckerdal. In Proc. 1st Al Baha University and Uppsala University Symposium on Quality in Computing Education, volume 2015-007 of Technical report / Department of Information Technology, Uppsala University, pp 16-18, 2015. (Proceedings).
8. Iterated fractional Tikhonov regularization. Davide Bianchi, Alessandro Buccini, Marco Donatelli, and Stefano Serra-Capizzano. In Inverse Problems, volume 31, pp 055005:1-34, 2015. (DOI).
9. Applications for ultrascale computing. Lars Ailo Bongo, Raimondas Ciegis, Neki Frasheri, Jing Gong, Dragi Kimovski, Peter Kropf, Svetozar Margenov, Milan Mihajlovic, Maya Neytcheva, Thomas Rauber, Gudula Rünger, Roman Trobec, Roel Wuyts, and Roman Wyrzykowski. In Supercomputing Frontiers and Innovations, volume 2, number 1, pp 19-48, 2015. (DOI, Fulltext).
10. Simulation of the Taylor–Green vortex using high­-order flux reconstruction schemes. Jonathan R. Bull and Antony Jameson. In AIAA Journal, volume 53, number 9, pp 2750-2761, 2015. (DOI, fulltext:postprint).
11. Goal-oriented adaptive finite element methods for elliptic problems revisited. Markus Bürg and Murtazo Nazarov. In Journal of Computational and Applied Mathematics, volume 287, pp 125-147, 2015. (DOI).
12. Conformal prediction in Spark: Large-scale machine learning with confidence. Marco Capuccini, Lars Carlsson, Ulf Norinder, and Ola Spjuth. In Proc. 2nd International Symposium on Big Data Computing, pp 61-67, IEEE Computer Society, Los Alamitos, CA, 2015. (DOI).
13. Competencies for paradigm shift "survival". Mats Daniels, Åsa Cajander, Anna Eckerdal, Mats Lind, Aletta Nylén, Tony Clear, and Roger McDermott. In Proc. 45th ASEE/IEEE Frontiers in Education Conference, pp 1424-1429, IEEE Press, Piscataway, NJ, 2015. (DOI).
14. Accelerated multigrid for graph Laplacian operators. Pietro Dell'Acqua, Antonio Frangioni, and Stefano Serra-Capizzano. In Applied Mathematics and Computation, volume 270, pp 193-215, 2015. (DOI).
15. Computational evaluation of multi-iterative approaches for solving graph-structured large linear systems. Pietro Dell'Acqua, Antonio Frangioni, and Stefano Serra-Capizzano. In Calcolo, volume 52, pp 425-444, 2015. (DOI).
16. Robust and optimal multi-iterative techniques for IgA Galerkin linear systems. Marco Donatelli, Carlo Garoni, Carla Manni, Stefano Serra-Capizzano, and Hendrik Speleers. In Computer Methods in Applied Mechanics and Engineering, volume 284, pp 230-264, 2015. (DOI).
17. Robust and optimal multi-iterative techniques for IgA collocation linear systems. Marco Donatelli, Carlo Garoni, Carla Manni, Stefano Serra-Capizzano, and Hendrik Speleers. In Computer Methods in Applied Mechanics and Engineering, volume 284, pp 1120-1146, 2015. (DOI).
18. Two-grid optimality for Galerkin linear systems based on B-splines. Marco Donatelli, Carlo Garoni, Carla Manni, Stefano Serra-Capizzano, and Hendrik Speleers. In Computing and Visualization in Science, volume 17, pp 119-133, 2015. (DOI).
19. Numerical and computational aspects of some block-preconditioners for saddle point systems. Ali Dorostkar, Maya Neytcheva, and Björn Lund. In Parallel Computing, volume 49, pp 164-178, 2015. (DOI).
20. Schur complement matrix and its (elementwise) approximation: A spectral analysis based on GLT sequences. Ali Dorostkar, Maya Neytcheva, and Stefano Serra-Capizzano. In Large-Scale Scientific Computing, volume 9374 of Lecture Notes in Computer Science, pp 419-426, Springer, 2015. (DOI).
21. Boundary conditions and stability of a perfectly matched layer for the elastic wave equation in first order form. Kenneth Duru, Jeremy E. Kozdon, and Gunilla Kreiss. In Journal of Computational Physics, volume 303, pp 372-395, 2015. (DOI).
22. Relating theory and practice in laboratory work: a variation theoretical study. Anna Eckerdal. In Studies in Higher Education, volume 40, pp 867-880, 2015. (DOI).
23. Machine learning for ultrafast X-ray diffraction patterns on large-scale GPU clusters. Tomas Ekeberg, Stefan Engblom, and Jing Liu. In The international journal of high performance computing applications, volume 29, pp 233-243, 2015. (DOI, fulltext:postprint).
24. On multiscale methods in Petrov–Galerkin formulation. Daniel Elfverson, Victor Ginting, and Patrick Henning. In Numerische Mathematik, volume 131, pp 643-682, 2015. (DOI).
25. Strong convergence for split-step methods in stochastic jump kinetics. Stefan Engblom. In SIAM Journal on Numerical Analysis, volume 53, pp 2655-2676, 2015. (DOI, fulltext:print).
26. A general tool for determining the asymptotic spectral distribution of Hermitian matrix-sequences. Carlo Garoni, Stefano Serra-Capizzano, and Paris Vassalos. In Operators and Matrices, volume 9, pp 549-561, 2015. (Article).
27. Spectral analysis and spectral symbol of <em>d</em>-variate Q<em>_p</em> Lagrangian FEM stiffness matrices. Carlo Garoni, Stefano Serra-Capizzano, and Debora Sesana. In SIAM Journal on Matrix Analysis and Applications, volume 36, pp 1100-1128, 2015. (DOI).
28. Tools for determining the asymptotic spectral distribution of non-Hermitian perturbations of Hemitian matrix-sequences and applications. Carlo Garoni, Stefano Serra-Capizzano, and Debora Sesana. In Integral equations and operator theory, volume 81, pp 213-225, 2015. (DOI).
29. Unsteady simulations of rotor stator interactions using SBP-SAT schemes: Status and challenges. Giorgio Giangaspero, Martin Almquist, Ken Mattsson, and Edwin van der Weide. In Spectral and High Order Methods for Partial Differential Equations: ICOSAHOM 2014, volume 106 of Lecture Notes in Computational Science and Engineering, pp 247-255, Springer, 2015. (DOI).
30. Data structures and algorithms for high-dimensional structured adaptive mesh refinement. Magnus Grandin. In Advances in Engineering Software, volume 82, pp 75-86, 2015. (DOI).
31. Diffusion equation: Computation. Bertil Gustafsson. In Encyclopedia of Applied and Computational Mathematics, pp 353-356, Springer, 2015. (DOI).
32. On preconditioning of incompressible non-Newtonian flow problems. Xin He, Maya Neytcheva, and Cornelis Vuik. In Journal of Computational Mathematics, volume 33, pp 33-58, 2015. (DOI).
33. Reaction rates for mesoscopic reaction-diffusion kinetics. Stefan Hellander, Andreas Hellander, and Linda Petzold. In Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, volume 91, pp 023312:1-12, 2015. (DOI, fulltext:print).
34. Error control and adaptivity for heterogeneous multiscale approximations of nonlinear monotone problems. Patrick Henning and Mario Ohlberger. In Discrete and Continuous Dynamical Systems. Series S, volume 8, pp 119-150, 2015. (DOI).
35. Imputation of single nucleotide polymorphism genotypes in biparental, backcross, and topcross populations with a hidden Markov model. John M. Hickey, Gregor Gorjanc, Rajeev K. Varshney, and Carl Nettelblad. In Crop science, volume 55, pp 1934-1946, 2015. (DOI, Fulltext).
36. On the bimodality in an introductory programming course: An analysis of student performance factors. Lars Josef Höök and Anna Eckerdal. In Proc. 3rd International Conference on Learning and Teaching in Computing and Engineering, pp 79-86, IEEE Computer Society, Los Alamitos, CA, 2015. (DOI).
37. Coupling of Gaussian beam and finite difference solvers for semiclassical Schrödinger equations. Emil Kieri, Gunilla Kreiss, and Olof Runborg. In Advances in Applied Mathematics and Mechanics, volume 7, pp 687-714, 2015. (DOI, fulltext:postprint).
38. Stiff convergence of force-gradient operator splitting methods. Emil Kieri. In Applied Numerical Mathematics, volume 94, pp 33-45, 2015. (DOI, fulltext:postprint).
39. Finite difference methods. Gunilla Kreiss. In Encyclopedia of Applied and Computational Mathematics, pp 516-521, Springer, 2015. (DOI).
40. Accuracy of the Michaelis–Menten approximation when analysing effects of molecular noise. Michael J. Lawson, Linda Petzold, and Andreas Hellander. In Journal of the Royal Society Interface, volume 12, number 106, pp 20150054:1-10, 2015. (DOI, fulltext:postprint).
41. Coverage segmentation of 3D thin structures. Kristína Lidayová, Joakim Lindblad, Nataša Sladoje, Hans Frimmel, Chunliang Wang, and Örjan Smedby. In Proc. 5th International Conference on Image Processing Theory, Tools and Applications, pp 23-28, IEEE, Piscataway, NJ, 2015. (DOI).
42. Fokker–Planck equation: Computation. Per Lötstedt. In Encyclopedia of Applied and Computational Mathematics, pp 556-559, Springer, 2015. (DOI).
43. Numerical option pricing without oscillations using flux limiters. Per Lötstedt and Lina von Sydow. In Computers and Mathematics with Applications, volume 70, pp 1-10, 2015. (DOI, fulltext:postprint).
44. Simulation of stochastic diffusion via first exit times. Per Lötstedt and Lina Meinecke. In Journal of Computational Physics, volume 300, pp 862-886, 2015. (DOI, fulltext:postprint).
45. Stabilized high-order Galerkin methods based on a parameter-free dynamic SGS model for LES. Simone Marras, Murtazo Nazarov, and Francis X. Giraldo. In Journal of Computational Physics, volume 301, pp 77-101, 2015. (DOI).
46. High-fidelity numerical simulation of the dynamic beam equation. Ken Mattsson and Vidar Stiernström. In Journal of Computational Physics, volume 286, pp 194-213, 2015. (DOI, fulltext:postprint).
47. Stochastic focusing coupled with negative feedback enables robust regulation in biochemical reaction networks. Andreas Milias-Argeitis, Stefan Engblom, Pavol Bauer, and Mustafa Khammash. In Journal of the Royal Society Interface, volume 12, number 113, pp 20150831:1-10, 2015. (DOI, fulltext:postprint).
48. Optimal bounds for a Lagrange interpolation inequality for piecewise linear continuous finite elements in two space dimensions. Èrgash Muhamadiev and Murtazo Nazarov. In Journal of Mathematical Analysis and Applications, volume 423, pp 940-955, 2015. (DOI).
49. Canonical density matrix perturbation theory. Anders M. N. Niklasson, Marc J. Cawkwell, Emanuel H. Rubensson, and Elias Rudberg. In Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, volume 92, pp 063301:1-8, 2015. (DOI, fulltext:print).
50. Stable difference methods for block-oriented adaptive grids. Anna Nissen, Katharina Kormann, Magnus Grandin, and Kristoffer Virta. In Journal of Scientific Computing, volume 65, pp 486-511, 2015. (DOI).
51. Multidimensional analysis of creative coding MOOC forums: a methodological discussion. Aletta Nylén, Neena Thota, Anna Eckerdal, Päivi Kinnunen, Matthew Butler, and Michael Morgan. In Proc. 15th International Conference on Computing Education Research: Koli Calling, pp 137-141, ACM Press, New York, 2015. (DOI).
52. Second year Computer Science and IT students' experience of participation in the discipline. Anne-Kathrin Peters, Anders Berglund, Anna Eckerdal, and Arnold Pears. In Proc. 15th International Conference on Computing Education Research: Koli Calling, pp 68-76, ACM Press, New York, 2015. (DOI).
53. Quasi-optimal preconditioners for finite element approximations of diffusion dominated convection–diffusion equations on (nearly) equilateral triangle meshes. Alessandro Russo, Stefano Serra-Capizzano, and Cristina Tablino-Possio. In Numerical Linear Algebra with Applications, volume 22, pp 123-144, 2015. (DOI).
54. A radial basis function partition of unity collocation method for convection–diffusion equations arising in financial applications. Ali Safdari-Vaighani, Alfa Heryudono, and Elisabeth Larsson. In Journal of Scientific Computing, volume 64, pp 341-367, 2015. (DOI, fulltext:postprint).
55. Realization of adiabatic Aharonov–Bohm scattering with neutrons. Erik Sjöqvist, Martin Almquist, Ken Mattsson, Zeynep Nilhan Gürkan, and Björn Hessmo. In Physical Review A. Atomic, Molecular, and Optical Physics, volume 92, number 5, pp 052108:1-5, 2015. (DOI).
56. Wave packet simulations of antiproton scattering on molecular hydrogen. Henrik Stegeby, Markus Kowalewski, Konrad Piszczatowski, and Hans O. Karlsson. In Journal of Physics B: Atomic, Molecular and Optical Physics, volume 48, number 19, pp 195204:1-7, 2015. (DOI).
57. A scalable RBF–FD method for atmospheric flow. Martin Tillenius, Elisabeth Larsson, Erik Lehto, and Natasha Flyer. In Journal of Computational Physics, volume 298, pp 406-422, 2015. (DOI, fulltext:postprint).
58. Resource-aware task scheduling. Martin Tillenius, Elisabeth Larsson, Rosa M. Badia, and Xavier Martorell. In ACM Transactions on Embedded Computing Systems, volume 14, number 1, pp 5:1-25, 2015. (DOI, Fulltext).
59. SuperGlue: A shared memory framework using data versioning for dependency-aware task-based parallelization. Martin Tillenius. In SIAM Journal on Scientific Computing, volume 37, pp C617-C642, 2015. (DOI, fulltext:print).
60. Scaling predictive modeling in drug development with cloud computing. Behrooz Torabi Moghadam, Jonathan Alvarsson, Marcus Holm, Martin Eklund, Lars Carlsson, and Ola Spjuth. In Journal of Chemical Information and Modeling, volume 55, pp 19-25, 2015. (DOI).
61. Accelerating COBAYA3 on multi-core CPU and GPU systems using PARALUTION. Nico Trost, Javier Jiménez, Dimitar Lukarski, and Victor Sanchez. In Annals of Nuclear Energy, volume 82, pp 252-259, 2015. (DOI).
62. Interface waves in almost incompressible elastic materials. Kristoffer Virta and Gunilla Kreiss. In Journal of Computational Physics, volume 303, pp 313-330, 2015. (DOI, fulltext:postprint).
63. Nonlinear identification of biological clock dynamics. Torbjörn Wigren and Per Lötstedt. In Proc. 54th Conference on Decision and Control, pp 602-608, IEEE, Piscataway, NJ, 2015. (DOI).
64. An efficient multi-step iterative method for computing the numerical solution of systems of nonlinear equations associated with ODEs. Malik Zaka Ullah, Stefano Serra-Capizzano, and Fayyaz Ahmad. In Applied Mathematics and Computation, volume 250, pp 249-259, 2015. (DOI).
65. Higher order multi-step iterative method for computing the numerical solution of systems of nonlinear equations: Application to nonlinear PDEs and ODEs. Malik Zaka Ullah, Stefano Serra-Capizzano, Fayyaz Ahmad, and Eman S. Al-Aidarous. In Applied Mathematics and Computation, volume 269, pp 972-987, 2015. (DOI).
66. Adaptive finite differences and IMEX time-stepping to price options under Bates model. Lina von Sydow, Jari Toivanen, and Chi Zhang. In International Journal of Computer Mathematics, volume 92, pp 2515-2529, 2015. (DOI, fulltext:postprint).
67. BENCHOP—The BENCHmarking project in Option Pricing. Lina von Sydow, Lars Josef Höök, Elisabeth Larsson, Erik Lindström, Slobodan Milovanovi?, Jonas Persson, Victor Shcherbakov, Yuri Shpolyanskiy, Samuel Sirén, Jari Toivanen, Johan Waldén, Magnus Wiktorsson, Jeremy Levesley, Juxi Li, Cornelis W. Oosterlee, Maria J. Ruijter, Alexander Toropov, and Yangzhang Zhao. In International Journal of Computer Mathematics, volume 92, pp 2361-2379, 2015. (DOI, fulltext:postprint).

2014

1. Atmospheric sound propagation over large-scale irregular terrain. Martin Almquist, Ilkka Karasalo, and Ken Mattsson. In Journal of Scientific Computing, volume 61, pp 369-397, 2014. (DOI).
2. High-fidelity numerical solution of the time-dependent Dirac equation. Martin Almquist, Ken Mattsson, and Tomas Edvinsson. In Journal of Computational Physics, volume 262, pp 86-103, 2014. (DOI).
3. A comparison of iterative methods to solve complex valued linear algebraic systems. Owe Axelsson, Maya Neytcheva, and Bashir Ahmad. In Numerical Algorithms, volume 66, pp 811-841, 2014. (DOI).
4. Duality based boundary conditions and dual consistent finite difference discretizations of the Navier–Stokes and Euler equations. Jens Berg and Jan Nordström. In Journal of Computational Physics, volume 259, pp 135-153, 2014. (DOI).
5. Wave simulation in 2D heterogeneous transversely isotropic porous media with fractional attenuation: A Cartesian grid approach. Emilie Blanc, Guillaume Chiavassa, and Bruno Lombard. In Journal of Computational Physics, volume 275, pp 118-142, 2014. (DOI).
6. Efficient numerical solution of discrete multi-component Cahn–Hilliard systems. Petia Boyanova and Maya Neytcheva. In Computers and Mathematics with Applications, volume 67, pp 106-121, 2014. (DOI).
7. CPU and GPU performance of large scale numerical simulations in Geophysics. Ali Dorostkar, Dimitar Lukarski, Björn Lund, Maya Neytcheva, Yvan Notay, and Peter Schmidt. In Euro-Par 2014: Parallel Processing Workshops, Part I, volume 8805 of Lecture Notes in Computer Science, pp 12-23, Springer, 2014. (DOI).
8. Boundary waves and stability of the perfectly matched layer for the two space dimensional elastic wave equation in second order form. Kenneth Duru and Gunilla Kreiss. In SIAM Journal on Numerical Analysis, volume 52, pp 2883-2904, 2014. (DOI).
9. Efficient and stable perfectly matched layer for CEM. Kenneth Duru and Gunilla Kreiss. In Applied Numerical Mathematics, volume 76, pp 34-47, 2014. (DOI).
10. Numerical interaction of boundary waves with perfectly matched layers in two space dimensional elastic waveguides. Kenneth Duru and Gunilla Kreiss. In Wave motion, volume 51, pp 445-465, 2014. (DOI).
11. Stable and high order accurate difference methods for the elastic wave equation in discontinuous media. Kenneth Duru and Kristoffer Virta. In Journal of Computational Physics, volume 279, pp 37-62, 2014. (DOI).
12. Stable and high-order accurate boundary treatments for the elastic wave equation on second-order form. Kenneth Duru, Gunilla Kreiss, and Ken Mattsson. In SIAM Journal on Scientific Computing, volume 36, pp A2787-A2818, 2014. (DOI).
13. Teaching and learning with MOOCs: Computing academics' perspectives and engagement. Anna Eckerdal, Päivi Kinnunen, Neena Thota, Aletta Nylén, Judy Sheard, and Lauri Malmi. In Proc. 19th Conference on Innovation and Technology in Computer Science Education, pp 9-14, ACM Press, New York, 2014. (DOI).
14. Uncertainty quantification for approximate p-quantiles for physical models with stochastic inputs. Daniel Elfverson, Donald J. Estep, Fredrik Hellman, and Axel Målqvist. In SIAM/ASA Journal on Uncertainty Quantification, volume 2, pp 826-850, 2014. (DOI).
15. Approximations for the moments of nonstationary and state dependent birth–death queues. Stefan Engblom and Jamol Pender. In Computing Research Repository, number 1406.6164, 2014. (DOI, External link).
16. On the stability of stochastic jump kinetics. Stefan Engblom. In Applied Mathematics, volume 5, pp 3217-3239, 2014. (DOI).
17. X-ray laser imaging of biomolecules using multiple GPUs. Stefan Engblom and Jing Liu. In Parallel Processing and Applied Mathematics: Part I, volume 8384 of Lecture Notes in Computer Science, pp 480-489, Springer-Verlag, Berlin, 2014. (DOI).
18. A Chebyshev pseudospectral method to solve the space–time tempered fractional diffusion equation. Emmanuel Hanert and Cécile Piret. In SIAM Journal on Scientific Computing, volume 36, pp A1797-A1812, 2014. (DOI).
19. A cut finite element method for a Stokes interface problem. Peter Hansbo, Mats G. Larson, and Sara Zahedi. In Applied Numerical Mathematics, volume 85, pp 90-114, 2014. (DOI).
20. Local error estimates for adaptive simulation of the reaction–diffusion master equation via operator splitting. Andreas Hellander, Michael J. Lawson, Brian Drawert, and Linda Petzold. In Journal of Computational Physics, volume 266, pp 89-100, 2014. (DOI).
21. A localized orthogonal decomposition method for semi-linear elliptic problems. Patrick Henning, Axel Målqvist, and Daniel Peterseim. In Mathematical Modelling and Numerical Analysis, volume 48, pp 1331-1349, 2014. (DOI).
22. Dynamic autotuning of adaptive fast multipole methods on hybrid multicore CPU and GPU systems. Marcus Holm, Stefan Engblom, Anders Goude, and Sverker Holmgren. In SIAM Journal on Scientific Computing, volume 36, pp C376-C399, 2014. (DOI).
23. Automatic and portable cloud deployment for scientific simulations. Christopher B. Horuk, Geoffrey Douglas, Anand Gupta, Chandra Krintz, Ben Bales, Giovanni Bellesia, Brian Drawert, Rich Wolski, Linda Petzold, and Andreas Hellander. In Proc. 12th International Conference on High Performance Computing and Simulation, pp 374-381, IEEE, Piscataway, NJ, 2014. (DOI).
24. Composition schemes for the stochastic differential equation describing collisional pitch-angle diffusion. Lars Josef Höök and Thomas Johnson. In Computer Physics Communications, volume 185, pp 590-594, 2014. (DOI).
25. Accelerated convergence for Schrödinger equations with non-smooth potentials. Emil Kieri. In BIT Numerical Mathematics, volume 54, pp 729-748, 2014. (DOI, fulltext:postprint).
26. Nucleophilic substitution dynamics: Comparing wave packet calculations with experiment. Markus Kowalewski, Jochen Mikosch, Roland Wester, and Regina de Vivie-Riedle. In Journal of Physical Chemistry A, volume 118, pp 4661-4669, 2014. (DOI).
27. Impact of code refactoring using object-oriented methodology on a scientific computing application. Malin Källén, Sverker Holmgren, and Ebba þóra Hvannberg. In Proc. 14th International Working Conference on Source Code Analysis and Manipulation, pp 125-134, IEEE Computer Society, Los Alamitos, CA, 2014. (DOI).
28. Matrix-free finite-element operator application on graphics processing units. Karl Ljungkvist. In Euro-Par 2014: Parallel Processing Workshops, Part II, volume 8806 of Lecture Notes in Computer Science, pp 450-461, Springer, 2014. (DOI).
29. On the impact of the heterogeneous multicore and many-core platforms on iterative solution methods and preconditioning techniques. Dimitar Lukarski and Maya Neytcheva. In High-Performance Computing on Complex Environments, pp 13-32, Wiley-Blackwell, Hoboken, NJ, 2014. (DOI).
30. Diagonal-norm summation by parts operators for finite difference approximations of third and fourth derivatives. Ken Mattsson. In Journal of Computational Physics, volume 274, pp 432-454, 2014. (DOI).
31. Optimal diagonal-norm SBP operators. Ken Mattsson, Martin Almquist, and Mark H. Carpenter. In Journal of Computational Physics, volume 264, pp 91-111, 2014. (DOI).
32. Localization of elliptic multiscale problems. Axel Målqvist and Daniel Peterseim. In Mathematics of Computation, volume 83, number 290, pp 2583-2603, 2014. (DOI).
33. A flexible boundary procedure for hyperbolic problems: Multiple penalty terms applied in a domain. Jan Nordström, Qaisar Abbas, Brittany A. Erickson, and Hannes Frenander. In Communications in Computational Physics, volume 16, pp 541-570, 2014. (DOI).
34. First year Computer Science and IT students' experience of participation in the discipline. Anne-Kathrin Peters, Anders Berglund, Anna Eckerdal, and Arnold Pears. In Proc. 2nd International Conference on Learning and Teaching in Computing and Engineering, pp 1-8, IEEE Computer Society, Los Alamitos, CA, 2014. (DOI, fulltext:preprint).
35. A stochastic Galerkin method for the Euler equations with Roe variable transformation. Per Pettersson, Gianluca Iaccarino, and Jan Nordström. In Journal of Computational Physics, volume 257, pp 481-500, 2014. (DOI).
36. Chunks and Tasks: A programming model for parallelization of dynamic algorithms. Emanuel H. Rubensson and Elias Rudberg. In Parallel Computing, volume 40, pp 328-343, 2014. (DOI).
37. Interior eigenvalues from density matrix expansions in quantum mechanical molecular dynamics. Emanuel H. Rubensson and Anders M. N. Niklasson. In SIAM Journal on Scientific Computing, volume 36, pp B147-B170, 2014. (DOI, fulltext:postprint).
38. An IMEX-scheme for pricing options under stochastic volatility models with jumps. Santtu Salmi, Jari Toivanen, and Lina von Sydow. In SIAM Journal on Scientific Computing, volume 36, pp B817-B834, 2014. (DOI).
39. MOOCs and their impact on academics. Judy Sheard, Anna Eckerdal, Päivi Kinnunen, Lauri Malmi, Aletta Nylén, and Neena Thota. In Proc. 14th International Conference on Computing Education Research: Koli Calling, pp 137-145, ACM Press, New York, 2014. (DOI).
40. A broader threshold: Including skills as well as concepts in computing education. Lynda Thomas, Jonas Boustedt, Anna Eckerdal, Robert McCartney, Jan Erik Moström, Kate Sanders, and Carol Zander. In Threshold Concepts: From personal practice to communities of practice, pp 154-158, NAIRTL, Cork, Ireland, 2014.
41. Graduating students' designs — through a phenomenographic lens. Lynda Thomas, Anna Eckerdal, Robert McCartney, Jan Erik Moström, Kate Sanders, and Carol Zander. In Proc. 10th International Computing Education Research Conference, pp 91-98, ACM Press, New York, 2014. (DOI).
42. Acoustic wave propagation in complicated geometries and heterogeneous media. Kristoffer Virta and Ken Mattsson. In Journal of Scientific Computing, volume 61, pp 90-118, 2014. (DOI).
43. Fast level-set based image segmentation using coherent propagation. Chunliang Wang, Hans Frimmel, and Örjan Smedby. In Medical physics (Lancaster), volume 41, pp 073501:1-11, 2014. (DOI).
44. Stochastic reaction–diffusion processes with embedded lower-dimensional structures. Siyang Wang, Johan Elf, Stefan Hellander, and Per Lötstedt. In Bulletin of Mathematical Biology, volume 76, pp 819-853, 2014. (DOI).

2013

1. A numerical study of scaling relations for non-Newtonian thin-film flows with applications in ice sheet modelling. Josefin Ahlkrona, Nina Kirchner, and Per Lötstedt. In Quarterly Journal of Mechanics and Applied Mathematics, volume 66, pp 417-435, 2013. (DOI).
2. Accuracy of the zeroth- and second-order shallow-ice approximation: numerical and theoretical results. Josefin Ahlkrona, Nina Kirchner, and Per Lötstedt. In Geoscientific Model Development, volume 6, pp 2135-2152, 2013. (DOI).
3. Scientific analysis by queries in extended SPARQL over a scalable e-Science data store. Andrej Andrejev, Salman Toor, Andreas Hellander, Sverker Holmgren, and Tore Risch. In Proc. 9th International Conference on e-Science, pp 98-106, IEEE Computer Society, Los Alamitos, CA, 2013. (DOI).
4. A general approach to analyse preconditioners for two-by-two block matrices. Owe Axelsson and Maya Neytcheva. In Numerical Linear Algebra with Applications, volume 20, pp 723-742, 2013. (DOI).
5. Numerical and computational efficiency of solvers for two-phase problems. Owe Axelsson, Petia Boyanova, Martin Kronbichler, Maya Neytcheva, and Xunxun Wu. In Computers and Mathematics with Applications, volume 65, pp 301-314, 2013. (DOI).
6. Response to Comment on "Preconditioning of matrices partitioned in 2×2 block form: Eigenvalue estimates and Schwarz DD for mixed FEM". Owe Axelsson and Radim Blaheta. In Numerical Linear Algebra with Applications, volume 20, pp 536-539, 2013. (DOI, Fulltext).
7. Efficient sampling in event-driven algorithms for reaction-diffusion processes. Mohammad Hossein Bani-Hashemian, Stefan Hellander, and Per Lötstedt. In Communications in Computational Physics, volume 13, pp 958-984, 2013. (DOI).
8. Computational precision of traffic equilibria sensitivities in automatic network design and road pricing. Hillel Bar-Gera, Fredrik Hellman, and Michael Patriksson. In Transportation Research Part B: Methodological, volume 57, pp 485-500, 2013. (DOI).
9. Duality based boundary treatment for the Euler and Navier-Stokes equations. Jens Berg and Jan Nordström. In Proc. 21st AIAA CFD Conference, volume 2013-2959 of Conference Proceeding Series, AIAA, 2013. (DOI).
10. On the impact of boundary conditions on dual consistent finite difference discretizations. Jens Berg and Jan Nordström. In Journal of Computational Physics, volume 236, pp 41-55, 2013. (DOI).
11. Control of shallow water and sediment continuity coupled system. Ababacar Diagne and Abdou Sène. In MCSS. Mathematics of Control, Signals and Systems, volume 25, pp 387-406, 2013. (DOI).
12. The well-posedness of diffuse interface modeling of surfactants in two-phase fluid flow. Minh Do-Quang, Stefan Engblom, Anna-Karin Tornberg, and Gustav Amberg. In Wetting and Evaporation: Droplets of Pure and Complex Fluids, pp 80-81, Aix-Marseille Université, France, 2013.
13. Analysing the enacted object of learning in lab assignments in programming education. Anna Eckerdal and Michael Thuné. In Proc. 1st International Conference on Learning and Teaching in Computing and Engineering, pp 208-211, IEEE Computer Society, Los Alamitos, CA, 2013. (DOI, fulltext:postprint).
14. An adaptive discontinuous Galerkin multiscale method for elliptic problems. Daniel Elfverson, Emmanuil H. Georgoulis, and Axel Målqvist. In Multiscale Modeling & simulation, volume 11, pp 747-765, 2013. (DOI).
15. Convergence of a discontinuous Galerkin multiscale method. Daniel Elfverson, Emmanuil H. Georgoulis, Axel Målqvist, and Daniel Peterseim. In SIAM Journal on Numerical Analysis, volume 51, pp 3351-3372, 2013. (DOI).
16. Scaffolding pedagogic excellence in higher education. Maja Elmgren, Staffan Andersson, Arnold Pears, and Stefan Pålsson. In Improving Student Learning through Research and Scholarship, pp 164-176, Oxford Brookes University, UK, 2013. (fulltext:print).
17. On diffuse interface modeling and simulation of surfactants in two-phase fluid flow. Stefan Engblom, Minh Do-Quang, Gustav Amberg, and Anna-Karin Tornberg. In Communications in Computational Physics, volume 14, pp 879-915, 2013. (DOI).
18. Well-posedness and stability of exact non-reflecting boundary conditions. Sofia Eriksson and Jan Nordström. In Proc. 21st AIAA CFD Conference, volume 2013-2960 of Conference Proceeding Series, AIAA, 2013. (DOI).
19. Stable calculation of Gaussian-based RBF-FD stencils. Bengt Fornberg, Erik Lehto, and Collin Powell. In Computers and Mathematics with Applications, volume 65, pp 627-637, 2013. (DOI).
20. Adaptive fast multipole methods on the GPU. Anders Goude and Stefan Engblom. In Journal of Supercomputing, volume 63, pp 897-918, 2013. (DOI).
21. A Riemann problem at a junction of open canals. Mouhamadou Samsidy Goudiaby and Gunilla Kreiss. In Journal of Hyperbolic Differential Equations, volume 10, pp 431-460, 2013. (DOI).
22. A delayed feedback control for network of open canals. Mouhamadou Samsidy Goudiaby, Abdou Sene, and Gunilla Kreiss. In International Journal of Dynamics and Control, volume 1, pp 316-329, 2013. (DOI).
23. Transcription factor binding kinetics constrain noise suppression via negative feedback. Andreas Grönlund, Per Lötstedt, and Johan Elf. In Nature Communications, volume 4, pp 1864:1-5, 2013. (DOI).
24. Time-Dependent Problems and Difference Methods. Bertil Gustafsson, Heinz-Otto Kreiss, and Joseph Oliger. John Wiley & Sons, Hoboken, NJ, 2013. (DOI).
25. Parallel implementation of the Sherman–Morrison matrix inverse algorithm. Xin He, Marcus Holm, and Maya Neytcheva. In Applied Parallel and Scientific Computing, volume 7782 of Lecture Notes in Computer Science, pp 206-219, Springer-Verlag, Berlin, 2013. (DOI).
26. Single molecule simulations in complex geometries with embedded dynamic one-dimensional structures. Stefan Hellander. In Journal of Chemical Physics, volume 139, pp 014103:1-11, 2013. (DOI).
27. Oversampling for the multiscale finite element method. Patrick Henning and Daniel Peterseim. In Multiscale Modeling & simulation, volume 11, pp 1149-1175, 2013. (DOI).
28. Finite element convergence for the Joule heating problem with mixed boundary conditions. Max Jensen and Axel Målqvist. In BIT Numerical Mathematics, volume 53, pp 475-496, 2013. (DOI).
29. A Galerkin radial basis function method for the Schrödinger equation. Katharina Kormann and Elisabeth Larsson. In SIAM Journal on Scientific Computing, volume 35, pp A2832-A2855, 2013. (DOI).
30. Femtosecond pump-probe spectroscopy for single trapped molecular ions. Markus Kowalewski, Steffen Kahra, Günther Leschhorn, Tobias Schätz, and Regina de Vivie-Riedle. In Proc. 18th International Conference on Ultrafast Phenomena, volume 41 of EPJ Web of Conferences, pp 02028:1-3, EDP Sciences, 2013. (DOI).
31. Discrete stability of perfectly matched layers for anisotropic wave equations in first and second order formulation. Gunilla Kreiss and Kenneth Duru. In BIT Numerical Mathematics, volume 53, pp 641-663, 2013. (DOI).
32. A variational multiscale method for Poisson's equation in mixed form. Mats G. Larson, Axel Målqvist, and Robert Söderlund. In Numerical Mathematics and Advanced Applications: 2011, pp 713-721, Springer-Verlag, Berlin, 2013. (DOI).
33. Gender-aware course reform in Scientific Computing. Elisabeth Larsson, Stefan Pålsson, Jarmo Rantakokko, Lina von Sydow, and Michael Thuné. In International journal of engineering education, volume 29, number 2, pp 403-414, 2013.
34. Radial basis function methods in computational finance. Elisabeth Larsson, Sônia M. Gomes, Alfa Heryudono, and Ali Safdari-Vaighani. In Proc. 13th International Conference on Computational and Mathematical Methods in Science and Engineering: Volume III, pp 895-906, Universidad de Almería, Spain, 2013.
35. Stable computation of differentiation matrices and scattered node stencils based on Gaussian radial basis functions. Elisabeth Larsson, Erik Lehto, Alfa Heryudono, and Bengt Fornberg. In SIAM Journal on Scientific Computing, volume 35, pp A2096-A2119, 2013. (DOI).
36. Preface: e-Science Applications and Tools. Erwin Laure and Sverker Holmgren. In Future Generation Computer Systems, volume 29, number 8, pp 2115-2116, 2013. (DOI).
37. Coverage segmentation of thin structures by linear unmixing and local centre of gravity attraction. Kristína Lidayová, Joakim Lindblad, Nataša Sladoje, and Hans Frimmel. In Proc. 8th International Symposium on Image and Signal Processing and Analysis, pp 83-88, IEEE Signal Processing Society, 2013. (DOI).
38. A solution to the stability issues with block norm summation by parts operators. Ken Mattsson and Martin Almquist. In Journal of Computational Physics, volume 253, pp 418-442, 2013. (DOI).
39. Can first-year students program yet?: a study revisited. Robert McCartney, Jonas Boustedt, Anna Eckerdal, Kate Sanders, and Carol Zander. In Proc. 9th International Computing Education Research Conference, pp 91-98, ACM Press, New York, 2013. (DOI).
40. MAPfastR: Quantitative trait loci mapping in outbred line crosses. Ronald M. Nelson, Carl Nettelblad, Mats E. Pettersson, Xia Shen, Lucy Crooks, François Besnier, José Álvarez-Castro, Lars Rönnegård, Weronica Ek, Zheya Sheng, Marcin Kierczak, Sverker Holmgren, and Örjan Carlborg. In G3: Genes, Genomes, Genetics, volume 3, pp 2147-2149, 2013. (DOI, Fulltext).
41. Breakdown of methods for phasing and imputation in the presence of double genotype sharing. Carl Nettelblad. In PLOS ONE, volume 8, pp e60354:1-5, 2013. (DOI, fulltext:print).
42. Fast and accurate detection of multiple quantitative trait loci. Carl Nettelblad, Behrang Mahjani, and Sverker Holmgren. In Journal of Computational Biology, volume 20, pp 687-702, 2013. (DOI).
43. High order stable finite difference methods for the Schrödinger equation. Anna Nissen, Gunilla Kreiss, and Margot Gerritsen. In Journal of Scientific Computing, volume 55, pp 173-199, 2013. (DOI).
44. Conjugate heat transfer for the unsteady compressible Navier–Stokes equations using a multi-block coupling. Jan Nordström and Jens Berg. In Computers & Fluids, volume 72, pp 20-29, 2013. (DOI).
45. Engagement in Computer Science and IT — What!: A matter of identity?. Anne-Kathrin Peters and Arnold Pears. In Proc. 1st International Conference on Learning and Teaching in Computing and Engineering, pp 114-121, IEEE Computer Society, Los Alamitos, CA, 2013. (DOI, fulltext:postprint).
46. Identity development of CS and IT students: What's the role of higher education?. Anne-Kathrin Peters. In Proc. 9th International Computing Education Research Conference, pp 187-188, ACM Press, New York, 2013. (DOI).
47. An intrusive hybrid method for discontinuous two-phase flow under uncertainty. Per Pettersson, Gianluca Iaccarino, and Jan Nordström. In Computers & Fluids, volume 86, pp 228-239, 2013. (DOI).
48. On stability and monotonicity requirements of finite difference approximations of stochastic conservation laws with random viscosity. Per Pettersson, Alireza Doostan, and Jan Nordström. In Computer Methods in Applied Mechanics and Engineering, volume 258, pp 134-151, 2013. (DOI).
49. Iterative methods for pricing American options under the Bates model. Santtu Salmi, Jari Toivanen, and Lina von Sydow. In Procedia Computer Science, volume 18, pp 1136-1144, 2013. (DOI).
50. Accurate surface embedding for higher order finite elements. Stefan Suwelack, Dimitar Lukarski, Vincent Heuveline, Rüdiger Dillmann, and Stefanie Speidel. In Proc. 12th ACM SIGGRAPH/Eurographics Symposium on Computer Animation, pp 187-192, ACM Press, New York, 2013. (DOI).
51. Molecular wave packet dynamics decelerated by solvent environment: A theoretical approach. Sebastian Thallmair, Markus Kowalewski, Benjamin P. Fingerhut, Christian F. Sailer, and Regina de Vivie-Riedle. In Proc. 18th International Conference on Ultrafast Phenomena, volume 41 of EPJ Web of Conferences, pp 05043:1-3, EDP Sciences, 2013. (DOI).
52. A uniformly well-conditioned, unfitted Nitsche method for interface problems. Eddie Wadbro, Sara Zahedi, Gunilla Kreiss, and Martin Berggren. In BIT Numerical Mathematics, volume 53, pp 791-820, 2013. (DOI).
53. On discontinuous Galerkin for time integration in option pricing problems with adaptive finite differences in space. Lina von Sydow. In Numerical Analysis and Applied Mathematics: ICNAAM 2013, volume 1558 of AIP Conference Proceedings, pp 2373-2376, American Institute of Physics (AIP), Melville, NY, 2013. (DOI).

2012

1. Macro-elementwise preconditioning methods. Owe Axelsson. In Mathematics and Computers in Simulation, volume 82, pp 1952-1963, 2012. (DOI).
2. A stable and dual consistent boundary treatment using finite differences on summation-by-parts form. Jens Berg and Jan Nordström. In Proc. ECCOMAS Congress 2012, pp 7557-7570, Tech. Univ. Wien, Austria, 2012.
3. Spectral analysis of the continuous and discretized heat and advection equation on single and multiple domains. Jens Berg and Jan Nordström. In Applied Numerical Mathematics, volume 62, pp 1620-1638, 2012. (DOI).
4. Superconvergent functional output for time-dependent problems using finite differences on summation-by-parts form. Jens Berg and Jan Nordström. In Journal of Computational Physics, volume 231, pp 6846-6860, 2012. (DOI).
5. Block-preconditioners for conforming and non-conforming FEM discretizations of the Cahn–Hilliard equation. Petia Boyanova, Minh Do-Quang, and Maya Neytcheva. In Large-Scale Scientific Computing, volume 7116 of Lecture Notes in Computer Science, pp 549-557, Springer-Verlag, Berlin, 2012. (DOI).
6. Efficient preconditioners for large scale binary Cahn–Hilliard models. Petia Boyanova, Minh Do-Quang, and Maya Neytcheva. In Computational Methods in Applied Mathematics, volume 12, pp 1-22, 2012. (DOI).
7. Canonical eigenvalue distribution of multilevel block Toeplitz sequences with non-Hermitian symbols. Marco Donatelli, Maya Neytcheva, and Stefano Serra-Capizzano. In Spectral Theory, Mathematical System Theory, Evolution Equations, Differential and Difference Equations, volume 221 of Operator Theory: Advances and Applications, pp 269-291, Springer, Basel, Switzerland, 2012. (DOI).
8. URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries. Brian Drawert, Stefan Engblom, and Andreas Hellander. In BMC Systems Biology, volume 6, pp 76:1-17, 2012. (DOI).
9. A well-posed and discretely stable perfectly matched layer for elastic wave equations in second order formulation. Kenneth Duru and Gunilla Kreiss. In Communications in Computational Physics, volume 11, pp 1643-1672, 2012. (DOI).
10. On the accuracy and stability of the perfectly matched layer in transient waveguides. Kenneth Duru and Gunilla Kreiss. In Journal of Scientific Computing, volume 53, pp 642-671, 2012. (DOI).
11. Finite element multiscale methods for Poisson's equation with rapidly varying heterogeneous coefficients. Daniel Elfverson and Axel Målqvist. In Proc. 10th World Congress on Computational Mechanics, p 10, International Association for Computational Mechanics, Barcelona, Spain, 2012.
12. Nonparametric density estimation for randomly perturbed elliptic problems III: Convergence, computational cost, and generalizations. Donald Estep, Michael J. Holst, and Axel Målqvist. In Journal of Applied Mathematics and Computing, volume 38, pp 367-387, 2012. (DOI).
13. A guide to RBF-generated finite differences for nonlinear transport: Shallow water simulations on a sphere. Natasha Flyer, Erik Lehto, Sébastien Blaise, Grady B. Wright, and Amik St-Cyr. In Journal of Computational Physics, volume 231, pp 4078-4095, 2012. (DOI).
14. A computer-assisted proof of the existence of traveling wave solutions to the scalar Euler equations with artificial viscosity. Oswald Fogelklou, Warwick Tucker, and Gunilla Kreiss. In NoDEA. Nonlinear differential equations and applications (Printed ed.), volume 19, pp 97-131, 2012. (DOI).
15. An algebraic approach for controlling cascade of reaches in irrigation canals. Mouhamadou Samsidy Goudiaby, Abdou Sene, and Gunilla Kreiss. In Problems, Perspectives and Challenges of Agricultural Water Management, pp 369-390, InTech, Rijeka, Croatia, 2012.
16. Communication-efficient algorithms for numerical quantum dynamics. Magnus Gustafsson, Katharina Kormann, and Sverker Holmgren. In Applied Parallel and Scientific Computing: Part II, volume 7134 of Lecture Notes in Computer Science, pp 368-378, Springer-Verlag, Berlin, 2012. (DOI).
17. Preconditioning the incompressible Navier-Stokes equations with variable viscosity. Xin He and Maya Neytcheva. In Journal of Computational Mathematics, volume 30, pp 461-482, 2012. (DOI).
18. Coupled mesoscopic and microscopic simulation of stochastic reaction-diffusion processes in mixed dimensions. Andreas Hellander, Stefan Hellander, and Per Lötstedt. In Multiscale Modeling & simulation, volume 10, pp 585-611, 2012. (DOI).
19. Reaction-diffusion master equation in the microscopic limit. Stefan Hellander, Andreas Hellander, and Linda Petzold. In Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, volume 85, pp 042901:1-5, 2012. (DOI).
20. Efficiently implementing Monte Carlo electrostatics simulations on multicore accelerators. Marcus Holm and Sverker Holmgren. In Applied Parallel and Scientific Computing: Part II, volume 7134 of Lecture Notes in Computer Science, pp 379-388, Springer-Verlag, Berlin, 2012. (DOI).
21. An adaptive pseudospectral method for wave packet dynamics. Emil Kieri, Sverker Holmgren, and Hans O. Karlsson. In Journal of Chemical Physics, volume 137, pp 044111:1-12, 2012. (DOI, fulltext:print).
22. Derivation of strictly stable high order difference approximations for variable-coefficient PDE. Katharina Kormann, Martin Kronbichler, and Bernhard Müller. In Journal of Scientific Computing, volume 50, pp 167-197, 2012. (DOI).
23. A generic interface for parallel cell-based finite element operator application. Martin Kronbichler and Katharina Kormann. In Computers & Fluids, volume 63, pp 135-147, 2012. (DOI).
24. High accuracy mantle convection simulation through modern numerical methods. Martin Kronbichler, Timo Heister, and Wolfgang Bangerth. In Geophysical Journal International, volume 191, pp 12-29, 2012. (DOI).
25. Summation by parts operators for finite difference approximations of second-derivatives with variable coefficients. Ken Mattsson. In Journal of Scientific Computing, volume 51, pp 650-682, 2012. (DOI).
26. Coherent estimates of genetic effects with missing information. Carl Nettelblad, Örjan Carlborg, Ania Pino-Querido, and José M. Álvarez-Castro. In Open Journal of Genetics, volume 2, pp 31-38, 2012. (DOI, Fulltext).
27. Inferring haplotypes and parental genotypes in larger full sib-ships and other pedigrees with missing or erroneous genotype data. Carl Nettelblad. In BMC Genetics, volume 13, pp 85:1-13, 2012. (DOI, fulltext:print).
28. Performance and stability of the Chelonia storage system. Jon Kerr Nilsen, Salman Toor, Zsombor Nagy, Bjarte Mohn, and Alex Read. In Proc. International Symposium on Grids and Clouds 2012, volume 153 of Proceedings of Science, pp 009:1-14, SISSA, Trieste, Italy, 2012.
29. Stability at nonconforming grid interfaces for a high order discretization of the Schrödinger equation. Anna Nissen, Gunilla Kreiss, and Margot Gerritsen. In Journal of Scientific Computing, volume 53, pp 528-551, 2012. (DOI).
30. Energy decay of vortices in viscous fluids: an applied mathematics view. Jan Nordström and Björn Lönn. In Journal of Fluid Mechanics, volume 709, pp 593-609, 2012. (DOI).
31. Weak and strong wall boundary procedures and convergence to steady-state of the Navier-Stokes equations. Jan Nordström, Sofia Eriksson, and Peter Eliasson. In Journal of Computational Physics, volume 231, pp 4867-4884, 2012. (DOI).
32. Students' experiences and attitudes towards learning Computer Science. Anne-Kathrin Peters and Arnold Pears. In Proc. 42nd ASEE/IEEE Frontiers in Education Conference, pp 88-93, IEEE, Piscataway, NJ, 2012. (DOI).
33. Comment on "On the optimal symmetric purification scheme of the one-particle density matrix" [Chem. Phys. Lett. 511 (2011) 159–160]. Emanuel H. Rubensson. In Chemical Physics Letters, volume 527, pp 84-85, 2012. (DOI).
34. Controlling errors in recursive Fermi–Dirac operator expansions with applications in electronic structure theory. Emanuel H. Rubensson. In SIAM Journal on Scientific Computing, volume 34, pp B1-B23, 2012. (DOI, fulltext:postprint).
35. Difficulties in applying pure Kohn–Sham density functional theory electronic structure methods to protein molecules. Elias Rudberg. In Journal of Physics: Condensed Matter, volume 24, pp 072202:1-7, 2012. (DOI).
36. Threshold concepts and threshold skills in computing. Kate Sanders, Jonas Boustedt, Anna Eckerdal, Robert McCartney, Jan Erik Moström, Lynda Thomas, and Carol Zander. In Proc. 8th International Computing Education Research Conference, pp 23-30, ACM Press, New York, 2012. (DOI).
37. Computer Science at School / CS Teacher Education: Koli working-group report on CS at school. Carsten Schulte, Malte Hornung, Sue Sentance, Valentina Dagiene, Tatjana Jevsikova, Neena Thota, Anna Eckerdal, and Anne-Kathrin Peters. In Proc. 12th International Conference on Computing Education Research: Koli Calling, pp 29-38, ACM Press, New York, 2012. (DOI).
38. Investigating an open source cloud storage infrastructure for CERN-specific data analysis. Salman Toor, Rainer Töebbicke, Maitane Zotes Resines, and Sverker Holmgren. In Proc. 7th International Conference on Networking, Architecture, and Storage, pp 84-88, IEEE Computer Society, Los Alamitos, CA, 2012. (DOI).
39. Programming models based on data versioning for dependency-aware task-based parallelisation. Afshin Zafari, Martin Tillenius, and Elisabeth Larsson. In Proc. 15th International Conference on Computational Science and Engineering, pp 275-280, IEEE Computer Society, Los Alamitos, CA, 2012. (DOI).
40. Spurious currents in finite element based level set methods for two-phase flow. Sara Zahedi, Martin Kronbichler, and Gunilla Kreiss. In International Journal for Numerical Methods in Fluids, volume 69, pp 1433-1456, 2012. (DOI).
41. Self-Directed Learning: stories from industry. Carol Zander, Jonas Boustedt, Anna Eckerdal, Robert McCartney, Jan Erik Moström, Kate Sanders, and Lynda Thomas. In Proc. 12th International Conference on Computing Education Research: Koli Calling, pp 111-117, ACM Press, New York, 2012. (DOI).
42. Abstractions for scaling eScience applications to distributed computing environments: A StratUm integration case study in molecular systems biology. Per-Olov Östberg, Andreas Hellander, Brian Drawert, Erik Elmroth, Sverker Holmgren, and Linda Petzold. In Proc. 3rd International Conference on Bioinformatics Models, Methods and Algorithms, pp 290-294, SciTePress, Setúbal, Portugal, 2012. (DOI).
43. Reducing complexity in management of eScience computations. Per-Olov Östberg, Andreas Hellander, Brian Drawert, Erik Elmroth, Sverker Holmgren, and Linda Petzold. In Proc. 12th International Symposium on Cluster, Cloud and Grid Computing, pp 845-852, IEEE Computer Society, Los Alamitos, CA, 2012. (DOI).

2011

1. Matrix Computations and Nonlinear Equations. Owe Axelsson and Xiaojun Chen (eds). Volume 18:2 of Numerical Linear Algebra with Applications, 2011.
2. Algorithms and data structures for massively parallel generic adaptive finite element codes. Wolfgang Bangerth, Carsten Burstedde, Timo Heister, and Martin Kronbichler. In ACM Transactions on Mathematical Software, volume 38, number 2, pp 14:1-28, 2011. (DOI).
3. Stable Robin solid wall boundary conditions for the Navier-Stokes equations. Jens Berg and Jan Nordström. In Journal of Computational Physics, volume 230, pp 7519-7532, 2011. (DOI).
4. Students' perceptions of the differences between formal and informal learning. Jonas Boustedt, Anna Eckerdal, Robert McCartney, Kate Sanders, Lynda Thomas, and Carol Zander. In Proc. 7th International Computing Education Research Workshop, pp 61-68, ACM Press, New York, 2011. (DOI).
5. An improved method for estimating chromosomal line origin in QTL analysis of crosses between outbred lines. Lucy Crooks, Carl Nettelblad, and Örjan Carlborg. In G3: Genes, Genomes, Genetics, volume 1, pp 57-64, 2011. (DOI).
6. Relationship between text and action conceptions of programming: a phenomenographic and quantitative perspective. Anna Eckerdal, Mikko-Jussi Laakso, Mike Lopez, and Amitrajit Sarkar. In Proc. 16th Conference on Innovation and Technology in Computer Science Education, pp 33-37, ACM Press, New York, 2011. (DOI).
7. Numerical option pricing in the presence of bubbles. Erik Ekström, Per Lötstedt, Lina von Sydow, and Johan Tysk. In Quantitative finance (Print), volume 11, pp 1125-1128, 2011. (DOI).
8. On well-separated sets and fast multipole methods. Stefan Engblom. In Applied Numerical Mathematics, volume 61, pp 1096-1102, 2011. (DOI).
9. A stable and conservative method for locally adapting the design order of finite difference schemes. Sofia Eriksson, Qaisar Abbas, and Jan Nordström. In Journal of Computational Physics, volume 230, pp 4216-4231, 2011. (DOI).
10. A computer-assisted proof of the existence of solutions to a boundary value problem with an integral boundary condition. Oswald Fogelklou, Warwick Tucker, Gunilla Kreiss, and Malin Siklosi. In Communications in nonlinear science & numerical simulation, volume 16, pp 1227-1243, 2011. (DOI).
11. Stabilization of RBF-generated finite difference methods for convective PDEs. Bengt Fornberg and Erik Lehto. In Journal of Computational Physics, volume 230, pp 2270-2285, 2011. (DOI).
12. Stable computations with Gaussian radial basis functions. Bengt Fornberg, Elisabeth Larsson, and Natasha Flyer. In SIAM Journal on Scientific Computing, volume 33, pp 869-892, 2011. (DOI).
13. Interface procedures for finite difference approximations of the advection-diffusion equation. Jing Gong and Jan Nordström. In Journal of Computational and Applied Mathematics, volume 236, pp 602-620, 2011. (DOI).
14. An algebraic variational multiscale–multigrid method for large-eddy simulation: Generalized-? time integration, Fourier analysis and application to turbulent flow past a square-section cylinder. Volker Gravemeier, Martin Kronbichler, Michael W. Gee, and Wolfgang A. Wall. In Computational Mechanics, volume 47, pp 217-233, 2011. (DOI).
15. Delay-induced anomalous fluctuations in intracellular regulation. Andreas Grönlund, Per Lötstedt, and Johan Elf. In Nature Communications, volume 2, pp 419:1-7, 2011. (DOI).
16. The work of David Gottlieb: a success story. Bertil Gustafsson. In Communications in Computational Physics, volume 9, pp 481-496, 2011. (DOI).
17. On an augmented Lagrangian-based preconditioning of Oseen type problems. Xin He, Maya Neytcheva, and Stefano Serra Capizzano. In BIT Numerical Mathematics, volume 51, pp 865-888, 2011. (DOI).
18. Flexible single molecule simulation of reaction-diffusion processes. Stefan Hellander and Per Lötstedt. In Journal of Computational Physics, volume 230, pp 3948-3965, 2011. (DOI).
19. Global error control of the time-propagation for the Schrödinger equation with a time-dependent Hamiltonian. Katharina Kormann, Sverker Holmgren, and Hans O. Karlsson. In Journal of Computational Science, volume 2, pp 178-187, 2011. (DOI).
20. Parallel finite element operator application: Graph partitioning and coloring. Katharina Kormann and Martin Kronbichler. In Proc. 7th International Conference on e-Science, pp 332-339, IEEE Computer Society, Los Alamitos, CA, 2011. (DOI).
21. Radial basis functions for the time-dependent Schrödinger equation. Katharina Kormann and Elisabeth Larsson. In Numerical Analysis and Applied Mathematics: ICNAAM 2011, volume 1389 of AIP Conference Proceedings, pp 1323-1326, American Institute of Physics (AIP), Melville, NY, 2011. (DOI).
22. A posteriori error estimates for mixed finite element approximations of parabolic problems. Mats G. Larson and Axel Målqvist. In Numerische Mathematik, volume 118, pp 33-48, 2011. (DOI).
23. Using hardware transactional memory for high-performance computing. Karl Ljungkvist, Martin Tillenius, David Black-Schaffer, Sverker Holmgren, Martin Karlsson, and Elisabeth Larsson. In Proc. 25th International Symposium on Parallel and Distributed Processing Workshops and PhD Forum, pp 1660-1667, IEEE, Piscataway, NJ, 2011. (DOI).
24. Multiscale methods for elliptic problems. Axel Målqvist. In Multiscale Modeling & simulation, volume 9, pp 1064-1086, 2011. (DOI).
25. Haplotype inference based on hidden Markov models in the QTL–MAS 2010 multigenerational dataset. Carl Nettelblad. In Proc. 14th European Workshop on QTL Mapping and Marker Assisted Selection, volume 5:3 of BMC Proceedings, pp S10:1-7, BioMed Central, London, 2011. (DOI).
26. Finite-element based sparse approximate inverses for block-factorized preconditioners. Maya Neytcheva, Erik Bängtsson, and Elisabeth Linnér. In Advances in Computational Mathematics, volume 35, pp 323-355, 2011. (DOI).
27. On element-by-element Schur complement approximations. Maya Neytcheva. In Linear Algebra and its Applications, volume 434, pp 2308-2324, 2011. (DOI).
28. Chelonia: A self-healing, replicated storage system. Jon Kerr Nilsen, Salman Toor, Zsombor Nagy, and Alex Read. In Computing in High Energy and Nuclear Physics: CHEP 2010, volume 331 of Journal of Physics: Conference Series, pp 062019:1-6, Institute of Physics Publishing (IOPP), Bristol, UK, 2011. (DOI).
29. An optimized perfectly matched layer for the Schrödinger equation. Anna Nissen and Gunilla Kreiss. In Communications in Computational Physics, volume 9, pp 147-179, 2011. (DOI).
30. A multigrid preconditioner for an adaptive Black–Scholes solver. Alison Ramage and Lina von Sydow. In BIT Numerical Mathematics, volume 51, pp 217-233, 2011. (DOI).
31. Bringing about matrix sparsity in linear-scaling electronic structure calculations. Emanuel H. Rubensson and Elias Rudberg. In Journal of Computational Chemistry, volume 32, pp 1411-1423, 2011. (DOI).
32. Methods for Hartree–Fock and density functional theory electronic structure calculations with linearly scaling processor time and memory usage. Emanuel H. Rubensson, Elias Rudberg, and Pawel Salek. In Linear-Scaling Techniques in Computational Chemistry and Physics: Methods and Applications, pp 263-300, Springer, Dordrecht, The Netherlands, 2011. (DOI).
33. Nonmonotonic recursive polynomial expansions for linear scaling calculation of the density matrix. Emanuel H. Rubensson. In Journal of Chemical Theory and Computation, volume 7, pp 1233-1236, 2011. (DOI).
34. Assessment of density matrix methods for linear scaling electronic structure calculations. Elias Rudberg and Emanuel H. Rubensson. In Journal of Physics: Condensed Matter, volume 23, pp 075502:1-10, 2011. (DOI).
35. Kohn–Sham density functional theory electronic structure calculations with linearly scaling computational time and memory usage. Elias Rudberg, Emanuel H. Rubensson, and Pawel Salek. In Journal of Chemical Theory and Computation, volume 7, pp 340-350, 2011. (DOI).
36. A scalable architecture for e-Science data management. Salman Toor, Manivasakan Sabesan, Sverker Holmgren, and Tore Risch. In Proc. 7th International Conference on e-Science, pp 210-217, IEEE Computer Society, Los Alamitos, CA, 2011. (DOI).
37. Optimization of a variable mouth acoustic horn. Rajitha Udawalpola, Eddie Wadbro, and Martin Berggren. In International Journal for Numerical Methods in Engineering, volume 85, pp 591-606, 2011. (DOI).

2010

1. Energy stability of the MUSCL scheme. Qaisar Abbas, Edwin van der Weide, and Jan Nordström. In Numerical Mathematics and Advanced Applications: 2009, pp 61-68, Springer-Verlag, Berlin, 2010. (DOI).
2. Weak versus strong no-slip boundary conditions for the Navier-Stokes equations. Qaisar Abbas and Jan Nordström. In Engineering Applications of Computational Fluid Mechanics, volume 4, pp 29-38, 2010.
3. The next-generation ARC middleware. Owen Appleton, David Cameron, Jozef Cernák, Péter Dóbé, Mattias Ellert, Thomas Frågåt, Michael Grønager, Daniel Johansson, Johan Jönemo, Josva Kleist, Marek Kocan, Aleksandr Konstantinov, Balázs Kónya, Iván Márton, Bjarte Mohn, Steffen Möller, Henning Müller, Zsombor Nagy, Jon K. Nilsen, Farid Ould-Saada, Katarina Pajchel, Weizhong Qiang, Alexander Read, Peter Rosendahl, Gábor Röczei, Martin Savko, Martin Skou Andersen, Oxana Smirnova, Péter Stefán, Ferenc Szalai, Adrian Taga, Salman Z. Toor, Anders Wäänänen, and Xin Zhou. In Annales des télécommunications, volume 65, pp 771-776, 2010. (DOI).
4. An additive matrix preconditioning method with application for domain decomposition and two-level matrix partitionings. Owe Axelsson. In Large-Scale Scientific Computing, volume 5910 of Lecture Notes in Computer Science, pp 76-83, Springer-Verlag, Berlin, 2010. (DOI).
5. Condition number analysis for various forms of block matrix preconditioners. Owe Axelsson and János Karátson. In Electronic Transactions on Numerical Analysis, volume 36, pp 168-194, 2010.
6. Robust AMLI methods for parabolic Crouzeix–Raviart FEM systems. Petia Boyanova, Svetozar Margenov, and Maya Neytcheva. In Journal of Computational and Applied Mathematics, volume 235, pp 380-390, 2010. (DOI).
7. A note on radial basis function interpolant limits. Martin D. Buhmann, Slawomir Dinew, and Elisabeth Larsson. In IMA Journal of Numerical Analysis, volume 30, pp 543-554, 2010. (DOI).
8. Revisiting and Extending Interface Penalties for Multidomain Summation-by-Parts Operators. Mark H. Carpenter, Jan Nordström, and David Gottlieb. In Journal of Scientific Computing, volume 45, pp 118-150, 2010. (DOI).
9. CellMC: a multiplatform model compiler for the Cell Broadband Engine and x86. Emmet Caulfield and Andreas Hellander. In Bioinformatics, volume 26, pp 426-428, 2010. (DOI).
10. Stable perfectly matched layers for the Schrödinger equations. Kenneth Duru and Gunilla Kreiss. In Numerical Mathematics and Advanced Applications: 2009, pp 287-295, Springer-Verlag, Berlin, 2010. (DOI).
11. Simulations of acoustic waves in a turbo-fan engine air intake. Gunilla Efraimsson, Nicolas Forsberg, and Jan Nordström. In Proc. 16th AIAA/CEAS Aeroacoustics Conference, volume 2010-3999 of Conference Proceeding Series, AIAA, 2010.
12. Agglomeration multigrid for the vertex-centered dual discontinuous Galerkin method. Sven-Erik Ekström and Martin Berggren. In ADIGMA — A European Initiative on the Development of Adaptive Higher-Order Variational Methods for Aerospace Applications, volume 113 of Notes on Numerical Fluid Mechanics and Multidisciplinary Design, pp 301-308, Springer-Verlag, Berlin, 2010. (DOI).
13. Incorporating a discontinuous Galerkin method into the existing vertex-centered edge-based finite volume solver Edge. Sven-Erik Ekström and Martin Berggren. In ADIGMA — A European Initiative on the Development of Adaptive Higher-Order Variational Methods for Aerospace Applications, volume 113 of Notes on Numerical Fluid Mechanics and Multidisciplinary Design, pp 39-52, Springer-Verlag, Berlin, 2010. (DOI).
14. An adaptive algorithm for simulation of stochastic reaction-diffusion processes. Lars Ferm, Andreas Hellander, and Per Lötstedt. In Journal of Computational Physics, volume 229, pp 343-360, 2010. (DOI).
15. Rotational transport on a sphere: Local node refinement with radial basis functions. Natasha Flyer and Erik Lehto. In Journal of Computational Physics, volume 229, pp 1954-1969, 2010. (DOI).
16. A novel method for solving multiscale elliptic problems with randomly perturbed data. Victor Ginting, Axel Målqvist, and Michael Presho. In Multiscale Modeling & simulation, volume 8, pp 977-996, 2010. (DOI).
17. An algebraic variational multiscale–multigrid method for large eddy simulation of turbulent flow. Volker Gravemeier, Michael W. Gee, Martin Kronbichler, and Wolfgang A. Wall. In Computer Methods in Applied Mechanics and Engineering, volume 199, pp 853-864, 2010. (DOI).
18. Costs and constraints from time-delayed feedback in small gene regulatory motifs. Andreas Grönlund, Per Lötstedt, and Johan Elf. In Proceedings of the National Academy of Sciences of the United States of America, volume 107, pp 8171-8176, 2010. (DOI).
19. An implementation framework for solving high-dimensional PDEs on massively parallel computers. Magnus Gustafsson and Sverker Holmgren. In Numerical Mathematics and Advanced Applications: 2009, pp 417-424, Springer-Verlag, Berlin, 2010. (DOI).
20. Generic finite element programming for massively parallel flow simulations. Timo Heister, Martin Kronbichler, and Wolfgang Bangerth. In Proc. ECCOMAS CFD Conference 2010, p 10, Tech. Univ. Lisbon, Portugal, 2010.
21. Massively parallel finite element programming. Timo Heister, Martin Kronbichler, and Wolfgang Bangerth. In Recent Advances in the Message Passing Interface, volume 6305 of Lecture Notes in Computer Science, pp 122-131, Springer-Verlag, Berlin, 2010. (DOI).
22. Incorporating active transport of cellular cargo in stochastic mesoscopic models of living cells. Andreas Hellander and Per Lötstedt. In Multiscale Modeling & simulation, volume 8, pp 1691-1714, 2010. (DOI).
23. Convergence analysis of finite element approximations of the Joule heating problem in three spatial dimensions. Michael J. Holst, Mats G. Larson, Axel Målqvist, and Robert Söderlund. In BIT Numerical Mathematics, volume 50, pp 781-795, 2010. (DOI).
24. Numerical methods for uncertainty propagation in high speed flows. Gianluca Iaccarino, Per Pettersson, Jan Nordström, and Jeroen Witteveen. In Proc. ECCOMAS CFD Conference 2010, p 11, Tech. Univ. Lisbon, Portugal, 2010.
25. A Grid-Enabled Problem Solving Environment for QTL Analysis in R. Mahen Jayawardena, Carl Nettelblad, Salman Toor, Per-Olov Östberg, Erik Elmroth, and Sverker Holmgren. In Proc. 2nd International Conference on Bioinformatics and Computational Biology, pp 202-209, ISCA, Cary, NC, 2010.
26. Magnetohydrodynamic flow of a Sisko fluid in annular pipe: A numerical study. Masood Khan, Qaisar Abbas, and Kenneth Duru. In International Journal for Numerical Methods in Fluids, volume 62, pp 1169-1180, 2010. (DOI).
27. A Fourier-coefficient based solution of an optimal control problem in quantum chemistry. Katharina Kormann, Sverker Holmgren, and Hans O. Karlsson. In Journal of Optimization Theory and Applications, volume 147, pp 491-506, 2010. (DOI).
28. Error control for simulations of a dissociative quantum system. Katharina Kormann and Anna Nissen. In Numerical Mathematics and Advanced Applications: 2009, pp 523-531, Springer-Verlag, Berlin, 2010. (DOI).
29. Numerical Mathematics and Advanced Applications: 2009. Gunilla Kreiss, Per Lötstedt, Axel Målqvist, and Maya Neytcheva (eds). Springer-Verlag, Berlin, 2010.
30. The Effect of Reynolds Number in High Order Accurate Calculations with Shock Diffraction. Craig Law, Qaisar Abbas, Jan Nordström, and Beric W. Skews. In Proc. 7th South African Conference on Computational and Applied Mechanics, pp 416-423, South African Association for Theoretical and Applied Mechanics, 2010. (fulltext:postprint).
31. A stable and high order interface procedure for conjugate heat transfer problems. Jens Lindström and Jan Nordström. In Numerical Mathematics and Advanced Applications: 2009, pp 599-607, Springer-Verlag, Berlin, 2010. (DOI).
32. A stable and high-order accurate conjugate heat transfer problem. Jens Lindström and Jan Nordström. In Journal of Computational Physics, volume 229, pp 5440-5456, 2010. (DOI).
33. Efficient algorithms for multidimensional global optimization in genetic mapping of complex traits. Kajsa Ljungberg, Kateryna Mishchenko, and Sverker Holmgren. In Advances and Applications in Bioinformatics and Chemistry, volume 3, pp 75-88, 2010. (DOI).
34. Stable and accurate interpolation operators for high-order multiblock finite difference methods. Ken Mattsson and Mark H. Carpenter. In SIAM Journal on Scientific Computing, volume 32, pp 2298-2320, 2010. (DOI).
35. Stable and accurate second-order formulation of the shifted wave equation. Ken Mattsson and Florencia Parisi. In Communications in Computational Physics, volume 7, pp 103-137, 2010. (DOI).
36. Computing students learning computing informally. Robert McCartney, Anna Eckerdal, Jan Erik Moström, Kate Sanders, Lynda Thomas, and Carol Zander. In Proc. 10th International Conference on Computing Education Research: Koli Calling, pp 43-48, ACM Press, New York, 2010. (DOI).
37. Assessing a multiple QTL search using the variance component model. Kateryna Mishchenko, Lars Rönnegård, Sverker Holmgren, and Volodymyr Mishchenko. In Computational biology and chemistry (Print), volume 34, pp 34-41, 2010. (DOI).
38. Element-by-element Schur complement approximations for general nonsymmetric matrices of two-by-two block form. Maya Neytcheva, Minh Do-Quang, and Xin He. In Large-Scale Scientific Computing, volume 5910 of Lecture Notes in Computer Science, pp 108-115, Springer-Verlag, Berlin, 2010. (DOI).
39. Chelonia — a self-healing storage cloud. Jon K. Nilsen, Salman Toor, Zsombor Nagy, and Bjarte Mohn. In Proc. 9th Cracow Grid Workshop, pp 5-12, ACC Cyfronet AGH, Kraków, Poland, 2010.
40. A perfectly matched layer applied to a reactive scattering problem. Anna Nissen, Hans O. Karlsson, and Gunilla Kreiss. In Journal of Chemical Physics, volume 133, pp 054306:1-11, 2010. (DOI).
41. Fluid structure interaction problems: the necessity of a well posed, stable and accurate formulation. Jan Nordström and Sofia Eriksson. In Communications in Computational Physics, volume 8, pp 1111-1138, 2010. (DOI).
42. A hybrid scheme for bore design optimization of a brass instrument. Daniel Noreland, Rajitha Udawalpola, and Martin Berggren. In Journal of the Acoustical Society of America, volume 128, pp 1391-1400, 2010. (DOI).
43. Pricing American options using a space-time adaptive finite difference method. Jonas Persson and Lina von Sydow. In Mathematics and Computers in Simulation, volume 80, pp 1922-1935, 2010. (DOI).
44. Boundary procedures for the time-dependent Burgers' equation under uncertainty. Per Pettersson, Jan Nordström, and Gianluca Iaccarino. In Acta Mathematica Scientia, volume 30, pp 539-550, 2010. (DOI).
45. Efficiency of shock capturing schemes for Burgers' equation with boundary uncertainty. Per Pettersson, Qaisar Abbas, Gianluca Iaccarino, and Jan Nordström. In Numerical Mathematics and Advanced Applications: 2009, pp 737-745, Springer-Verlag, Berlin, 2010. (DOI).
46. Density estimation of two-phase flow with multiscale and randomly perturbed data. Michael Presho, Axel Målqvist, and Victor Ginting. In Advances in Water Resources, volume 33, pp 1130-1141, 2010. (DOI).
47. A computational study of vortex-airfoil interaction using high-order finite difference methods. Magnus Svärd, Johan Lundberg, and Jan Nordström. In Computers & Fluids, volume 39, pp 1267-1274, 2010. (DOI).
48. Harnessing Surprise: Tales from students' transformational biographies. Lynda Thomas, Carol Zander, and Anna Eckerdal. In Proc. 41st ACM Technical Symposium on Computer Science Education, pp 300-304, ACM Press, New York, 2010. (DOI).
49. Threshold Concepts in Computer Science: an ongoing empirical investigation. Lynda Thomas, Jonas Boustedt, Anna Eckerdal, Robert McCartney, Jan Erik Moström, Kate Sanders, and Carol Zander. In Threshold Concepts and Transformational Learning, pp 241-258, Sense Publishers, Rotterdam, The Netherlands, 2010.
50. An efficient task-based approach for solving the <em>n</em>-body problem on multicore architectures. Martin Tillenius and Elisabeth Larsson. PARA 2010: State of the Art in Scientific and Parallel Computing, University of Iceland, Reykjavík, 2010. (fulltext:postprint).
51. High contrast microwave tomography using topology optimization techniques. Eddie Wadbro and Martin Berggren. In Journal of Computational and Applied Mathematics, volume 234, pp 1773-1780, 2010. (DOI).
52. Microwave tomographic imaging as a sequence of topology optimization problems. Eddie Wadbro. In Optimization and Engineering, volume 11, pp 597-610, 2010. (DOI).
53. Shape and topology optimization of an acoustic horn-lens combination. Eddie Wadbro, Rajitha Udawalpola, and Martin Berggren. In Journal of Computational and Applied Mathematics, volume 234, pp 1781-1787, 2010. (DOI).
54. Analysis and visualization of information quality of technical documentation. Anna Wingkvist, Welf Löwe, Morgan Ericsson, and Rüdiger Lincke. In Proc. 4th European Conference on Information Management and Evaluation, pp 388-396, Academic Conferences, Reading, UK, 2010.
55. Information quality testing. Anna Wingkvist, Morgan Ericsson, Welf Löwe, and Rüdiger Lincke. In Perspectives in Business Informatics Research, volume 64 of Lecture Notes in Business Information Processing, pp 14-26, Springer-Verlag, Berlin, 2010. (DOI).
56. Direct numerical simulations of localized disturbances in pipe Poiseuille flow. Per-Olov Åsén, Gunilla Kreiss, and Dietmar Rempfer. In Computers & Fluids, volume 39, pp 926-935, 2010. (DOI).

2009

1. Accurate and stable calculations involving shocks using a new hybrid scheme. Qaisar Abbas, Edwin van der Weide, and Jan Nordström. In Proc. 19th AIAA CFD Conference, volume 2009-3985 of Conference Proceeding Series, AIAA, 2009.
2. Equivalent operator preconditioning for elliptic problems. Owe Axelsson and János Karátson. In Numerical Algorithms, volume 50, pp 297-380, 2009. (DOI).
3. Preconditioning of boundary value problems using elementwise Schur complements. Owe Axelsson, Radim Blaheta, and Maya Neytcheva. In SIAM Journal on Matrix Analysis and Applications, volume 31, pp 767-789, 2009. (DOI).
4. The local Green's function method in singularly perturbed convection-diffusion problems. Owe Axelsson, Evgeny Glushkov, and Natalya Glushkova. In Mathematics of Computation, volume 78, number 265, pp 153-170, 2009. (DOI).
5. A discontinuous Galerkin extension of the vertex-centered edge-based finite volume method. Martin Berggren, Sven-Erik Ekström, and Jan Nordström. In Communications in Computational Physics, volume 5, pp 456-468, 2009.
6. Learning computer science: Perceptions, actions and roles. Anders Berglund, Anna Eckerdal, Arnold Pears, Philip East, Päivi Kinnunen, Lauri Malmi, Robert McCartney, Jan Erik Moström, Laurie Murphy, Mark Ratcliffe, Carsten Schulte, Beth Simon, Ioanna Stamouli, and Lynda Thomas. In European Journal of Engineering Education, volume 34, pp 327-338, 2009. (DOI).
7. Students' understanding of the concept of interface in a situated context. Jonas Boustedt. In Computer Science Education, volume 19, pp 15-36, 2009. (DOI).
8. Analytical solutions for a single blade in vertical axis turbine motion in two dimensions. Paul Deglaire, Stefan Engblom, Olov Ågren, and Hans Bernhoff. In European journal of mechanics. B, Fluids, volume 28, pp 506-520, 2009. (DOI).
9. Analysis of stretched grids as buffer zones in aero-acoustic simulations. Gunilla Efraimsson and Gunilla Kreiss. In Proc. 15th AIAA/CEAS Aeroacoustics Conference, volume 2009-3113 of Conference Proceeding Series, AIAA, 2009.
10. Boundary values and finite difference methods for the single factor term structure equation. Erik Ekström, Per Lötstedt, and Johan Tysk. In Applied Mathematical Finance, volume 16, pp 253-259, 2009. (DOI).
11. The influence of weak and strong solid wall boundary conditions on the convergence to steady-state of the Navier-Stokes equations. Peter Eliasson, Sofia Eriksson, and Jan Nordström. In Proc. 19th AIAA CFD Conference, volume 2009-3551 of Conference Proceeding Series, AIAA, 2009.
12. Galerkin spectral method applied to the chemical master equation. Stefan Engblom. In Communications in Computational Physics, volume 5, pp 871-896, 2009.
13. Parallel in time simulation of multiscale stochastic chemical kinetics. Stefan Engblom. In Multiscale Modeling & simulation, volume 8, pp 46-68, 2009. (DOI).
14. Simulation of stochastic reaction-diffusion processes on unstructured meshes. Stefan Engblom, Lars Ferm, Andreas Hellander, and Per Lötstedt. In SIAM Journal on Scientific Computing, volume 31, pp 1774-1797, 2009. (DOI).
15. Spectral approximation of solutions to the chemical master equation. Stefan Engblom. In Journal of Computational and Applied Mathematics, volume 229, pp 208-221, 2009. (DOI).
16. Multiscale Modeling and Simulation in Science. Björn Engquist, Per Lötstedt, and Olof Runborg (eds). Volume 66 of Lecture Notes in Computational Science and Engineering, Springer-Verlag, Berlin, 2009.
17. Analysis of mesh and boundary effects on the accuracy of node-centered finite volume schemes. Sofia Eriksson and Jan Nordström. In Proc. 19th AIAA CFD Conference, volume 2009-3651 of Conference Proceeding Series, AIAA, 2009.
18. Analysis of the order of accuracy for node-centered finite volume schemes. Sofia Eriksson and Jan Nordström. In Applied Numerical Mathematics, volume 59, pp 2659-2676, 2009. (DOI).
19. Nonparametric density estimation for randomly perturbed elliptic problems I: Computational methods, a posteriori analysis, and adaptive error control. Donald Estep, Axel Målqvist, and Simon Tavener. In SIAM Journal on Scientific Computing, volume 31, pp 2935-2959, 2009. (DOI).
20. Nonparametric density estimation for randomly perturbed elliptic problems II: Applications and adaptive modeling. Donald Estep, Axel Målqvist, and Simon Tavener. In International Journal for Numerical Methods in Engineering, volume 80, pp 846-867, 2009. (DOI).
21. Adaptive solution of the master equation in low dimensions. Lars Ferm and Per Lötstedt. In Applied Numerical Mathematics, volume 59, pp 187-204, 2009. (DOI).
22. Investigation of acceleration effects on missile aerodynamics using computational fluid dynamics. Igle M. A. Gledhill, Karl Forsberg, Peter Eliasson, Jeffrey Baloyi, and Jan Nordström. In Aerospace Science and Technology, volume 13, pp 197-203, 2009. (DOI).
23. Adaptive stochastic hybrid simulation of biochemical reaction-diffusion models. Andreas Hellander, Lars Ferm, and Per Lötstedt. In Proc. 3rd International Conference on Foundations of Systems Biology in Engineering, p 4, The Systems Biology Institute, 2009. (Preprint).
24. A grid portal for genetic analysis of complex traits. Mahen Jayawardena, Salman Toor, and Sverker Holmgren. In Proc. 32nd International Convention on Information and Communication Technology, Electronics and Microelectronics: Volume I, pp 281-284, MIPRO, Rijeka, Croatia, 2009.
25. Whole-body adipose tissue analysis: Comparison of MRI, CT and dual energy X-ray absorptiometry. Joel Kullberg, John Brandberg, Jan-Erik Angelhed, Hans Frimmel, Eva Bergelin, Lena Strid, Håkan Ahlström, Lars Johansson, and Lars Lönn. In British Journal of Radiology, volume 82, pp 123-130, 2009. (DOI).
26. Software Issues in Computational Science and Engineering. Hans Petter Langtangen and Michael Thuné (eds). Volume 4:4 of International Journal of Computational Science and Engineering, 2009.
27. A mixed adaptive variational multiscale method with applications in oil reservoir simulation. Mats G. Larson and Axel Målqvist. In Mathematical Models and Methods in Applied Sciences, volume 19, pp 1017-1042, 2009. (DOI).
28. An adaptive variational multiscale method for convection-diffusion problems. Mats G. Larson and Axel Målqvist. In Communications in Numerical Methods in Engineering, volume 25, pp 65-79, 2009. (DOI).
29. Implicit-explicit Runge-Kutta methods for stiff combustion problems. Erik Lindblad, Damir M. Valiev, Bernhard Müller, Jarmo Rantakokko, Per Lötstedt, and Michael A. Liberman. In Shock Waves: Volume 1, pp 299-304, Springer-Verlag, Berlin, 2009. (DOI).
30. A highly accurate adaptive finite difference solver for the Black–Scholes equation. Gunilla Linde, Jonas Persson, and Lina von Sydow. In International Journal of Computer Mathematics, volume 86, pp 2104-2121, 2009. (DOI).
31. Measurements and numerical modelling of orifice flow in microchannels. Jens Lindström, Johan Bejhed, and Jan Nordström. In Proc. 41st AIAA Thermophysics Conference, volume 2009-4098 of Conference Proceeding Series, AIAA, 2009.
32. Naturally Occurring Data as Research Instrument: Analyzing examination responses to study the novice programmer. Raymond Lister, Tony Clear, Simon, Dennis J. Bouvier, Paul Carter, Anna Eckerdal, Jana Jacková, Mike Lopez, Robert McCartney, Phil Robbins, Otto Seppälä, and Errol Thompson. In SIGCSE Bulletin inroads, volume 41, number 4, pp 156-173, 2009. (DOI).
33. Stable Boundary Treatment for the Wave Equation on Second-Order Form. Ken Mattsson, Frank Ham, and Gianluca Iaccarino. In Journal of Scientific Computing, volume 41, pp 366-383, 2009. (DOI).
34. Liminal spaces and learning computing. Robert McCartney, Jonas Boustedt, Anna Eckerdal, Jan Erik Moström, Kate Sanders, Lynda Thomas, and Carol Zander. In European Journal of Engineering Education, volume 34, pp 383-391, 2009. (DOI).
35. New algorithms for evaluating the log-likelihood function derivatives in the AI-REML method. Kateryna Mishchenko and Maya Neytcheva. In Communications in statistics. Simulation and computation, volume 38, pp 1348-1364, 2009. (DOI).
36. Computer Science Student Transformations: Changes and Causes. Jan Erik Moström, Jonas Boustedt, Anna Eckerdal, Robert McCartney, Kate Sanders, Lynda Thomas, and Carol Zander. In SIGCSE Bulletin inroads, volume 41, number 3, pp 181-185, 2009. (DOI).
37. Strictly stable high order difference methods for the compressible Euler and Navier-Stokes equations. Bernhard Müller. In Computational Fluid Dynamics: 2006, pp 125-130, Springer-Verlag, Berlin, 2009. (DOI).
38. cnF2freq: Efficient determination of genotype and haplotype probabilities in outbred populations using Markov models. Carl Nettelblad, Sverker Holmgren, Lucy Crooks, and Örjan Carlborg. In Bioinformatics and Computational Biology, volume 5462 of Lecture Notes in Computer Science, pp 307-319, Springer-Verlag, Berlin, 2009. (DOI).
39. A hybrid method for unsteady inviscid fluid flow. Jan Nordström, Frank Ham, Mohammad Shoeybi, Edwin van der Weide, Magnus Svärd, Ken Mattsson, Gianluca Iaccarino, and Jing Gong. In Computers & Fluids, volume 38, pp 875-882, 2009. (DOI).
40. A stable and conservative high order multi-block method for the compressible Navier-Stokes equations. Jan Nordström, Jing Gong, Edwin van der Weide, and Magnus Svärd. In Journal of Computational Physics, volume 228, pp 9020-9035, 2009. (DOI).
41. Shock and vortex calculations using a very high order accurate Euler and Navier-Stokes solver. Jan Nordström, Sofia Eriksson, Craig Law, and Jing Gong. In Journal of Mechanics and MEMS, volume 1, number 1, pp 19-26, 2009.
42. Boundary procedures for the time-dependent stochastic Burgers' equation. Per Pettersson, Gianluca Iaccarino, and Jan Nordström. In Proc. 19th AIAA CFD Conference, volume 2009-3550 of Conference Proceeding Series, AIAA, 2009.
43. Numerical analysis of the Burgers' equation in the presence of uncertainty. Per Pettersson, Gianluca Iaccarino, and Jan Nordström. In Journal of Computational Physics, volume 228, pp 8394-8412, 2009. (DOI).
44. Parallel Structured Adaptive Mesh Refinement. Jarmo Rantakokko and Michael Thuné. In Parallel Computing: Numerics, Applications, and Trends, pp 147-173, Springer-Verlag, London, 2009. (DOI).
45. Fokker-Planck approximation of the master equation in molecular biology. Paul Sjöberg, Per Lötstedt, and Johan Elf. In Computing and Visualization in Science, volume 12, pp 37-50, 2009. (DOI).
46. Variation theory applied to students' conceptions of computer programming. Michael Thuné and Anna Eckerdal. In European Journal of Engineering Education, volume 34, pp 339-347, 2009. (DOI).
47. Megapixel topology optimization on a graphics processing unit. Eddie Wadbro and Martin Berggren. In SIAM Review, volume 51, pp 707-721, 2009. (DOI).
48. Reconsidering algorithms for iterative solvers in the multicore era. Dan Wallin, Henrik Löf, Erik Hagersten, and Sverker Holmgren. In International Journal of Computational Science and Engineering, volume 4, pp 270-282, 2009. (DOI).
49. A meta-model describing the development process of mobile learning. Anna Wingkvist and Morgan Ericsson. In Advances in Web Based Learning – ICWL 2009, volume 5686 of Lecture Notes in Computer Science, pp 454-463, Springer-Verlag, Berlin, 2009. (DOI).
50. Current practice in mobile learning: A survey of research method and purpose. Anna Wingkvist and Morgan Ericsson. In Proc. 8th World Conference on Mobile and Contextual Learning, pp 103-111, University of Central Florida, Orlando, FL, 2009.
51. Sharing experience from three initiatives in mobile learning: Lessons learned. Anna Wingkvist and Morgan Ericsson. In Proc. 17th International Conference on Computers in Education, pp 613-617, Asia-Pacific Society for Computers in Education, Jhongli City, Taiwan, 2009.
52. Thinking ahead in mobile learning projects: A survey on risk assessment. Anna Wingkvist and Morgan Ericsson. In Proc. 8th International Conference on Perspectives in Business Informatics Research, pp 57-66, Kristianstad Academic Press, Sweden, 2009.
53. A conservative level set method for contact line dynamics. Sara Zahedi, Katarina Gustavsson, and Gunilla Kreiss. In Journal of Computational Physics, volume 228, pp 6361-6375, 2009. (DOI).
54. Student Transformations: Are they computer scientists yet?. Carol Zander, Jonas Boustedt, Robert McCartney, Jan Erik Moström, Kate Sanders, and Lynda Thomas. In Proc. 5th International Computing Education Research Workshop, pp 129-140, ACM Press, New York, 2009. (DOI).

2008

1. Pyramidal flux in an anisotropic diffusion scheme for enhancing structures in 3D images. Oscar Acosta, Hans Frimmel, Aaron Fenster, Olivier Salvado, and Sébastien Ourselin. In Medical Imaging 2008: Image Processing, volume 6914 of Proc. SPIE, pp 691429:1-12, Bellingham, WA, 2008. (DOI).
2. Mesh independent convergence rates via differential operator pairs. Owe Axelsson and János Karátson. In Large-Scale Scientific Computing, volume 4818 of Lecture Notes in Computer Science, pp 3-15, Springer-Verlag, Berlin, 2008. (DOI).
3. Hybrid differentiation strategies for simulation and analysis of applications in C₊₊. Roscoe A. Bartlett, Bart G. van Bloemen Waanders, and Martin Berggren. In ACM Transactions on Mathematical Software, volume 35, number 1, pp 1:1-29, 2008. (DOI).
4. Learning educational research methods through collaborative research: the PhICER initiative. Anders Berglund, Ilona Box, Anna Eckerdal, Raymond Lister, and Arnold Pears. In Australian Computer Science Communications, volume 30, number 5, pp 35-42, 2008. (External link).
5. A methodology for exploring students' experiences and interaction with large-scale software through role-play and phenomenography. Jonas Boustedt. In Proc. 4th International Computing Education Research Workshop, pp 27-38, ACM Press, New York, 2008. (DOI).
6. A comparison between two solution techniques to solve the equations of glacially induced deformation of an elastic Earth. Erik Bängtsson and Björn Lund. In International Journal for Numerical Methods in Engineering, volume 75, pp 479-502, 2008. (DOI).
7. Empowering a flexible application portal with a SOA-based grid job management framework. Erik Elmroth, Sverker Holmgren, Jonas Lindemann, Salman Toor, and Per-Olov Östberg. PARA 2008: State of the Art in Scientific and Parallel Computing, Norwegian University of Science and Technology, Trondheim, Norway, 2008.
8. Time-parallel simulation of stochastic chemical kinetics. Stefan Engblom. In Numerical Analysis and Applied Mathematics: ICNAAM 2008, volume 1048 of AIP Conference Proceedings, pp 174-177, American Institute of Physics (AIP), Melville, NY, 2008. (DOI).
9. Simulations of Ground Effects on Wake Vortices at Runways. Sofia Eriksson, Magnus Svärd, and Jan Nordström. In Proc. 6th South African Conference on Computational and Applied Mechanics, pp 101-108, South African Association for Theoretical and Applied Mechanics, 2008.
10. A hierarchy of approximations of the master equation scaled by a size parameter. Lars Ferm, Per Lötstedt, and Andreas Hellander. In Journal of Scientific Computing, volume 34, pp 127-151, 2008. (DOI).
11. Analysis of stresses in two-dimensional isostatic granular systems. Margot Gerritsen, Gunilla Kreiss, and Raphael Blumenfeld. In Physica A: Statistical Mechanics and its Applications, volume 387, pp 6263-6276, 2008. (DOI).
12. Stress chain solutions in two-dimensional isostatic granular systems: Fabric-dependent paths, leakage, and branching. Margot Gerritsen, Gunilla Kreiss, and Raphael Blumenfeld. In Physical Review Letters, volume 101, pp 098001:1-4, 2008. (DOI).
13. CFD in Non-Inertial Frames Applied to an Oscillating Airfoil and a Straked Body. Igle M. A. Gledhill, Jeffrey Baloyi, Karl Forsberg, Peter Eliasson, and Jan Nordström. In Proc. 6th South African Conference on Computational and Applied Mechanics, pp 92-100, South African Association for Theoretical and Applied Mechanics, 2008.
14. High Order Difference Methods for Time Dependent PDE. Bertil Gustafsson. Springer-Verlag, Berlin, 2008. (DOI).
15. Sparse grids and hybrid methods for the chemical master equation. Markus Hegland, Andreas Hellander, and Per Lötstedt. In BIT Numerical Mathematics, volume 48, pp 265-283, 2008. (DOI).
16. Efficient computation of transient solutions of the chemical master equation based on uniformization and quasi-Monte Carlo. Andreas Hellander. In Journal of Chemical Physics, volume 128, pp 154109:1-7, 2008. (DOI).
17. A modular simulation framework for colonoscopy using a new haptic device. David Hellier, Evren Samur, Josh Passenger, Ulrich Spälter, Hans Frimmel, Mark Appleyard, Hannes Bleuler, and Sébastien Ourselin. In Medicine Meets Virtual Reality 16, volume 132 of Studies in Health Technology and Informatics, pp 165-170, IOS Press, Amsterdam, The Netherlands, 2008.
18. Efficient optimization algorithms and implementations for genetic analysis of complex traits on a grid system with multicore nodes. Mahen Jayawardena, Henrik Löf, and Sverker Holmgren. PARA 2008: State of the Art in Scientific and Parallel Computing, Norwegian University of Science and Technology, Trondheim, Norway, 2008.
19. A patch-based partitioner for parallel SAMR applications. Henrik Johansson and Abbas Vakili. In Proc. Parallel and Distributed Computing and Systems: 2008, pp 53-58, ACTA Press, Calgary, Canada, 2008. (fulltext:postprint).
20. Accurate time propagation for the Schrödinger equation with an explicitly time-dependent Hamiltonian. Katharina Kormann, Sverker Holmgren, and Hans O. Karlsson. In Journal of Chemical Physics, volume 128, pp 184101:1-11, 2008. (DOI).
21. Stability of viscous shocks on finite intervals. Gunilla Kreiss, Heinz-Otto Kreiss, and Jens Lorenz. In Archive for Rational Mechanics and Analysis, volume 187, pp 157-183, 2008. (DOI).
22. A hybrid level-set Cahn–Hilliard model for two-phase flow. Martin Kronbichler and Gunilla Kreiss. In Proc. 1st European Conference on Microfluidics, pp 59:1-10, La Société Hydrotechnique de France, 2008. (fulltext:postprint).
23. A posteriori error estimates for mixed finite element approximations of elliptic problems. Mats G. Larson and Axel Målqvist. In Numerische Mathematik, volume 108, pp 487-500, 2008. (DOI).
24. Multi-dimensional option pricing using radial basis functions and the generalized Fourier transform. Elisabeth Larsson, Krister Åhlander, and Andreas Hall. In Journal of Computational and Applied Mathematics, volume 222, pp 175-192, 2008. (DOI).
25. Stability criteria for hybrid difference methods. Johan Larsson and Bertil Gustafsson. In Journal of Computational Physics, volume 227, pp 2886-2898, 2008. (DOI).
26. Component infrastructure for managing performance data and runtime adaptation of parallel applications. Li Li, Boyana Norris, Henrik Johansson, Lois Curfman McInnes, and Jaideep Ray. PARA 2008: State of the Art in Scientific and Parallel Computing, Norwegian University of Science and Technology, Trondheim, Norway, 2008. (fulltext:postprint).
27. Stable and accurate schemes for the compressible Navier-Stokes equations. Ken Mattsson, Magnus Svärd, and Mohammad Shoeybi. In Journal of Computational Physics, volume 227, pp 2293-2316, 2008. (DOI).
28. Stable and accurate wave-propagation in discontinuous media. Ken Mattsson, Frank Ham, and Gianluca Iaccarino. In Journal of Computational Physics, volume 227, pp 8753-8767, 2008. (DOI).
29. Newton-type methods for REML estimation in genetic analysis of quantitative traits. Kateryna Mishchenko, Sverker Holmgren, and Lars Rönnegård. In Journal of Computational Methods in Sciences and Engineering, volume 8, pp 53-67, 2008.
30. Concrete examples of abstraction as manifested in students' transformative experiences. Jan Erik Moström, Jonas Boustedt, Anna Eckerdal, Robert McCartney, Kate Sanders, Lynda Thomas, and Carol Zander. In Proc. 4th International Computing Education Research Workshop, pp 125-135, ACM Press, New York, 2008. (DOI).
31. High order numerical simulation of Aeolian tones. Bernhard Müller. In Computers & Fluids, volume 37, pp 450-462, 2008. (DOI).
32. Preconditioning of nonsymmetric saddle point systems as arising in modelling of viscoelastic problems. Maya Neytcheva and Erik Bängtsson. In Electronic Transactions on Numerical Analysis, volume 29, pp 193-211, 2008.
33. Geographical locality and dynamic data migration for OpenMP implementations of adaptive PDE solvers. Markus Nordén, Henrik Löf, Jarmo Rantakokko, and Sverker Holmgren. In OpenMP Shared Memory Parallel Programming, volume 4315 of Lecture Notes in Computer Science, pp 382-393, Springer-Verlag, Berlin, 2008. (DOI).
34. Improved radial basis function methods for multi-dimensional option pricing. Ulrika Pettersson, Elisabeth Larsson, Gunnar Marcusson, and Jonas Persson. In Journal of Computational and Applied Mathematics, volume 222, pp 82-93, 2008. (DOI).
35. Student Understanding of Object-Oriented Programming as Expressed in Concept Maps. Kate Sanders, Jonas Boustedt, Anna Eckerdal, Robert McCartney, Jan Erik Moström, Lynda Thomas, and Carol Zander. In SIGCSE Bulletin inroads, volume 40, number 1, pp 332-336, 2008. (DOI).
36. Stability of the notion of approximating class of sequences and applications. Stefano Serra-Capizzano and Per Sundqvist. In Journal of Computational and Applied Mathematics, volume 219, pp 518-536, 2008. (DOI).
37. A stable high-order finite difference scheme for the compressible Navier-Stokes equations: no-slip wall boundary conditions. Magnus Svärd and Jan Nordström. In Journal of Computational Physics, volume 227, pp 4805-4824, 2008. (DOI).
38. An accuracy evaluation of unstructured node-centred finite volume methods. Magnus Svärd, Jing Gong, and Jan Nordström. In Applied Numerical Mathematics, volume 58, pp 1142-1158, 2008. (DOI).
39. Optimization of an acoustic horn with respect to efficiency and directivity. Rajitha Udawalpola and Martin Berggren. In International Journal for Numerical Methods in Engineering, volume 73, pp 1571-1606, 2008. (DOI).
40. Microwave tomography using topology optimization techniques. Eddie Wadbro and Martin Berggren. In SIAM Journal on Scientific Computing, volume 30, pp 1613-1633, 2008. (DOI).
41. An interactive software module for visualizing coronary arteries in CT angiography. Chunliang Wang, Hans Frimmel, Anders Persson, and Örjan Smedby. In International Journal of Computer Assisted Radiology and Surgery, volume 3, pp 11-18, 2008. (DOI).
42. An interface capturing method for two-phase flow with moving contact lines. Sara Zahedi, Gunilla Kreiss, and Katarina Gustavsson. In Proc. 1st European Conference on Microfluidics, pp 118:1-10, La Société Hydrotechnique de France, 2008. (fulltext:postprint).
43. Threshold Concepts in Computer Science: a multinational empirical investigation. Carol Zander, Jonas Boustedt, Anna Eckerdal, Robert McCartney, Jan Erik Moström, Mark Ratcliffe, and Kate Sanders. In Threshold Concepts within the Disciplines, pp 105-118, Sense Publishers, Rotterdam, The Netherlands, 2008.

2007

1. Filtering and restoration of structures in 3D ultrasound images. Oscar Acosta, Hans Frimmel, Aaron Fenster, and Sébastien Ourselin. In Proc. 4th International Symposium on Biomedical Imaging, pp 888-891, IEEE, Piscataway, NJ, 2007. (DOI).
2. Application of a perfectly matched layer to the nonlinear wave equation. Daniel Appelö and Gunilla Kreiss. In Wave motion, volume 44, pp 531-548, 2007. (DOI).
3. Tuneable Peak Deformations in Chiral Liquid Chromatography. Robert Arnell, Patrik Forssén, and Torgny Fornstedt. In Analytical Chemistry, volume 79, pp 5838-5847, 2007. (DOI).
4. Double Sobolev gradient preconditioning for nonlinear elliptic problems. Owe Axelsson and János Karátson. In Numerical Methods for Partial Differential Equations, volume 23, pp 1018-1036, 2007. (DOI).
5. Mesh independent superlinear PCG rates via compact-equivalent operators. Owe Axelsson and János Karátson. In SIAM Journal on Numerical Analysis, volume 45, pp 1495-1516, 2007. (DOI).
6. Symmetric part preconditioning of the CG method for Stokes type saddle-point systems. Owe Axelsson and János Karátson. In Numerical Functional Analysis and Optimization, volume 28, pp 1027-1049, 2007. (DOI).
7. Schwarz methods for discrete elliptic and parabolic problems with an application to nuclear waste repository modelling. Radim Blaheta, Roman Kohut, Maya Neytcheva, and Jirí Starý. In Mathematics and Computers in Simulation, volume 76, pp 18-27, 2007. (DOI).
8. Threshold Concepts in Computer Science: Do they exist and are they useful?. Jonas Boustedt, Anna Eckerdal, Robert McCartney, Jan Erik Moström, Mark Ratcliffe, Kate Sanders, and Carol Zander. In SIGCSE Bulletin inroads, volume 39, number 1, pp 504-508, 2007. (DOI).
9. Discrete fundamental solution preconditioning for hyperbolic systems of PDE. Henrik Brandén, Sverker Holmgren, and Per Sundqvist. In Journal of Scientific Computing, volume 30, pp 35-60, 2007. (DOI).
10. From Limen to Lumen: Computing students in liminal spaces. Anna Eckerdal, Robert McCartney, Jan Erik Moström, Kate Sanders, Lynda Thomas, and Carol Zander. In Proc. 3rd International Computing Education Research Workshop, pp 123-132, ACM Press, New York, 2007. (DOI).
11. Numerical method for coupling the macro and meso scales in stochastic chemical kinetics. Lars Ferm and Per Lötstedt. In BIT Numerical Mathematics, volume 47, pp 735-762, 2007. (DOI).
12. Reduction of attenuation effects in 3D transrectal ultrasound images. Hans Frimmel, Oscar Acosta, Aaron Fenster, and Sébastien Ourselin. In Medical Imaging 2007: Ultrasonic Imaging and Signal Processing, volume 6513 of Proc. SPIE, pp 65130Z:1-8, Bellingham, WA, 2007. (DOI).
13. A stable and efficient hybrid scheme for viscous problems in complex geometries. Jing Gong and Jan Nordström. In Journal of Computational Physics, volume 226, pp 1291-1309, 2007. (DOI).
14. Variational multiscale methods for large eddy simulation of turbulent flows: Fourier analysis and application to diffuser flow. Volker Gravemeier, Martin Kronbichler, and Wolfgang A. Wall. In Proc. 5th International Symposium on Turbulence and Shear Flow Phenomena, pp 461-466, TU München, Garching, Germany, 2007.
15. Towards time-stable and accurate LES on unstructured grids. Frank Ham, Ken Mattsson, Gianluca Iaccarino, and Parviz Moin. In Complex Effects in Large Eddy Simulations, volume 56 of Lecture Notes in Computational Science and Engineering, pp 235-249, Springer-Verlag, Berlin, 2007. (DOI).
16. Hybrid method for the chemical master equation. Andreas Hellander and Per Lötstedt. In Journal of Computational Physics, volume 227, pp 100-122, 2007. (DOI).
17. Mesh deformation using radial basis functions for gradient-based aerodynamic shape optimization. Stefan Jakobsson and Olivier Amoignon. In Computers & Fluids, volume 36, pp 1119-1136, 2007. (DOI).
18. Grid-enabling an efficient algorithm for demanding global optimization problems in genetic analysis. Mahen Jayawardena and Sverker Holmgren. In Proc. 3rd International Conference on e-Science and Grid Computing, pp 205-212, IEEE Computer Society, Los Alamitos, CA, 2007. (DOI).
19. Using parallel computing and grid systems for genetic mapping of quantitative traits. Mahen Jayawardena, Kajsa Ljungberg, and Sverker Holmgren. In Applied Parallel Computing: State of the Art in Scientific Computing, volume 4699 of Lecture Notes in Computer Science, pp 627-636, Springer-Verlag, Berlin, 2007. (DOI).
20. Obtaining the bidirectional transmittance distribution function of isotropically scattering materials using an integrating sphere. Jacob C. Jonsson and Henrik Brandén. In Optics Communications, volume 277, pp 228-236, 2007. (DOI).
21. Modeling of contact line dynamics for two-phase flow. Gunilla Kreiss. In Proceedings in Applied Mathematics and Mechanics: PAMM, volume 7, number 1, pp 1141603-1141604, 2007. (DOI).
22. Automated and reproducible segmentation of visceral and subcutaneous adipose tissue from abdominal MRI. Joel Kullberg, Håkan Ahlström, Lars Johansson, and Hans Frimmel. In International Journal of Obesity, volume 31, pp 1806-1817, 2007. (DOI).
23. Space-time adaptive finite difference method for European multi-asset options. Per Lötstedt, Jonas Persson, Lina von Sydow, and Johan Tysk. In Computers and Mathematics with Applications, volume 53, pp 1159-1180, 2007. (DOI).
24. High-order accurate computations for unsteady aerodynamics. Ken Mattsson, Magnus Svärd, Mark Carpenter, and Jan Nordström. In Computers & Fluids, volume 36, pp 636-649, 2007. (DOI).
25. Successful Students' Strategies for Getting Unstuck. Robert McCartney, Anna Eckerdal, Jan Erik Moström, Kate Sanders, and Carol Zander. In SIGCSE Bulletin inroads, volume 39, number 3, pp 156-160, 2007. (DOI).
26. Numerical analysis and adaptive computation for solutions of elliptic problems with randomly perturbed coefficients. Axel Målqvist, Donald Estep, and Simon Tavener. In Proceedings in Applied Mathematics and Mechanics: PAMM, volume 7, number 1, pp 1140401-1140402, 2007. (DOI).
27. Boundary conditions for a divergence free velocity-pressure formulation of the Navier-Stokes equations. Jan Nordström, Ken Mattsson, and Charles Swanson. In Journal of Computational Physics, volume 225, pp 874-890, 2007. (DOI).
28. Error bounded schemes for time-dependent hyperbolic problems. Jan Nordström. In SIAM Journal on Scientific Computing, volume 30, pp 46-59, 2007. (DOI).
29. Dynamic data migration for structured AMR solvers. Markus Nordén, Henrik Löf, Jarmo Rantakokko, and Sverker Holmgren. In International journal of parallel programming, volume 35, pp 477-491, 2007. (DOI).
30. A conservative level set method for two phase flow II. Elin Olsson, Gunilla Kreiss, and Sara Zahedi. In Journal of Computational Physics, volume 225, pp 785-807, 2007. (DOI).
31. What’s the problem?: Teachers’ experience of student learning successes and failures. Arnold Pears, Anders Berglund, Anna Eckerdal, Philip East, Päivi Kinnunen, Lauri Malmi, Robert McCartney, Jan Erik Moström, Laurie Murphy, Mark Bartley Ratcliffe, Carsten Schulte, Beth Simon, Ioanna Stamouli, and Lynda Thomas. In Proc. 7th Baltic Sea Conference on Computing Education Research: Koli Calling, volume 88 of CRPIT, pp 207-211, Australian Computer Society, 2007. (External link).
32. Pricing European multi-asset options using a space-time adaptive FD-method. Jonas Persson and Lina von Sydow. In Computing and Visualization in Science, volume 10, pp 173-183, 2007. (DOI).
33. Increasing the efficiency of variance component quantitative trait loci analysis by using reduced-rank identity-by-descent matrices. Lars Rönnegård, Kateryna Mishchenko, Sverker Holmgren, and Örjan Carlborg. In Genetics, volume 176, pp 1935-1938, 2007. (DOI).
34. Partial approximation of the master equation by the Fokker-Planck equation. Paul Sjöberg. In Applied Parallel Computing: State of the Art in Scientific Computing, volume 4699 of Lecture Notes in Computer Science, pp 637-646, Springer-Verlag, Berlin, 2007. (DOI).
35. A stable high-order finite difference scheme for the compressible Navier-Stokes equations: far-field boundary conditions. Magnus Svärd, Mark H. Carpenter, and Jan Nordström. In Journal of Computational Physics, volume 225, pp 1020-1038, 2007. (DOI).
36. Identification of the main arterial branches by whole-body contrast-enhanced MRA in elderly subjects using limited user interaction and fast marching. Xavier Tizon, Qingfen Lin, Tomas Hansen, Gunilla Borgefors, Lars Johansson, Håkan Ahlström, and Hans Frimmel. In Journal of Magnetic Resonance Imaging, volume 25, pp 806-814, 2007. (DOI).
37. Accuracy evaluation of the unstructured node-centered finite volume method in aerodynamic computations. Lars Tysell and Jan Nordström. In Proc. 10th ISGG Conference on Numerical Grid Generation, pp 146-158, Curran Associates, Red Hook, NY, 2007.
38. Sparse generalized Fourier transforms. Krister Åhlander and Daniel Henriksson. In BIT Numerical Mathematics, volume 47, pp 213-237, 2007. (DOI).

2006

1. Solving inverse electromagnetic problems using FDTD and gradient-based minimization. Erik Abenius and Bo Strand. In International Journal for Numerical Methods in Engineering, volume 68, pp 650-673, 2006. (DOI).
2. Thin Sheet Modeling Using Shell Elements in the Finite-Element Time-Domain Method. Erik Abenius and Fredrik Edelvik. In IEEE Transactions on Antennas and Propagation, volume 54, pp 28-34, 2006. (DOI).
3. Shape optimization for delay of laminar-turbulent transition. Olivier Amoignon, Jan Pralits, Ardeshir Hanifi, Martin Berggren, and Dan Henningson. In AIAA Journal, volume 44, pp 1009-1024, 2006. (DOI).
4. Perfectly matched layers for hyperbolic systems: General formulation, well-posedness, and stability. Daniel Appelö, Thomas Hagstrom, and Gunilla Kreiss. In SIAM Journal on Applied Mathematics, volume 67, pp 1-23, 2006. (DOI).
5. Eigenvalue estimates for preconditioned saddle point matrices. Owe Axelsson and Maya Neytcheva. In Numerical Linear Algebra with Applications, volume 13, pp 339-360, 2006. (DOI).
6. A vertex-centered, dual discontinuous Galerkin method. Martin Berggren. In Journal of Computational and Applied Mathematics, volume 192, pp 175-181, 2006. (DOI).
7. What do CS students try to learn?: Insights from a distributed, project-based course in computer systems. Anders Berglund and Anna Eckerdal. In Computer Science Education, volume 16, pp 185-195, 2006. (DOI).
8. Aggregation-based multilevel preconditioning of non-conforming FEM elasticity problems. Radim Blaheta, Svetozar Margenov, and Maya Neytcheva. In Applied Parallel Computing: State of the Art in Scientific Computing, volume 3732 of Lecture Notes in Computer Science, pp 847-856, Springer-Verlag, Berlin, 2006. (DOI).
9. An agglomerate multilevel preconditioner for linear isostasy saddle point problems. Erik Bängtsson and Maya Neytcheva. In Large-Scale Scientific Computing, volume 3743 of Lecture Notes in Computer Science, pp 113-120, Springer-Verlag, Berlin, 2006. (DOI).
10. Can Graduating Students Design Software Systems?. Anna Eckerdal, Robert McCartney, Jan Erik Moström, Mark Ratcliffe, and Carol Zander. In SIGCSE Bulletin inroads, volume 38, number 1, pp 403-407, 2006. (DOI).
11. Categorizing student software designs: Methods, results, and implications. Anna Eckerdal, Robert McCartney, Jan Erik Moström, Mark Ratcliffe, and Carol Zander. In Computer Science Education, volume 16, pp 197-209, 2006. (DOI).
12. Putting Threshold Concepts into Context in Computer Science Education. Anna Eckerdal, Robert McCartney, Jan Erik Moström, Mark Ratcliffe, Kate Sanders, and Carol Zander. In SIGCSE Bulletin inroads, volume 38, number 3, pp 103-107, 2006. (DOI).
13. An investigation of the performance of a high-order accurate Navier-Stokes code. Gunilla Efraimsson, Jing Gong, Magnus Svärd, and Jan Nordström. In Proc. ECCOMAS CFD Conference 2006, p 11, Tech. Univ. Delft, The Netherlands, 2006.
14. Computing the moments of high dimensional solutions of the master equation. Stefan Engblom. In Applied Mathematics and Computation, volume 180, pp 498-515, 2006. (DOI).
15. Conservative solution of the Fokker-Planck equation for stochastic chemical reactions. Lars Ferm, Per Lötstedt, and Paul Sjöberg. In BIT Numerical Mathematics, volume 46, pp S61-S83, 2006. (DOI).
16. Space-Time Adaptive Solution of First Order PDES. Lars Ferm and Per Lötstedt. In Journal of Scientific Computing, volume 26, pp 83-110, 2006. (DOI).
17. A new class of oscillatory radial basis functions. Bengt Fornberg, Elisabeth Larsson, and Grady Wright. In Computers and Mathematics with Applications, volume 51, pp 1209-1222, 2006. (DOI).
18. An improved algorithm for solving inverse problems in liquid chromatography. Patrik Forssén, Robert Arnell, and Torgny Fornstedt. In Computers and Chemical Engineering, volume 30, pp 1381-1391, 2006. (DOI).
19. General theory of indirect detection in chromatography. Patrik Forssén and Torgny Fornstedt. In Journal of Chromatography A, volume 1126, pp 268-275, 2006. (DOI).
20. Topology optimization of mass distribution problems in Stokes flow. Allan Gersborg-Hansen, Martin Berggren, and Bernd Dammann. In Topological Design Optimization of Structures, Machines and Materials: Status and Perspectives, volume 137 of Solid Mechanics and its Applications, pp 365-374, Springer, Dordrecht, The Netherlands, 2006. (DOI).
21. Accelerating Systems: Some Remarks on Pitch Damping. Igle M. A. Gledhill, Jeffrey Baloyi, Motodi Maserumule, Karl Forsberg, Peter Eliasson, and Jan Nordström. In Proc. 5th South African Conference on Computational and Applied Mechanics, pp 268-275, South African Association for Theoretical and Applied Mechanics, 2006.
22. The shifted box scheme for scalar transport problems. Bertil Gustafsson and Yaser Khalighi. In Journal of Scientific Computing, volume 28, pp 319-335, 2006. (DOI).
23. Can one hear the composition of a drum?. Sverker Holmgren, Stefano Serra-Capizzano, and Per Sundqvist. In Mediterranean Journal of Mathematics, volume 3, pp 227-249, 2006. (DOI).
24. Analyzing advanced PDE solvers through simulation. Henrik Johansson, Dan Wallin, and Sverker Holmgren. In Applied Parallel Computing: State of the Art in Scientific Computing, volume 3732 of Lecture Notes in Computer Science, pp 893-900, Springer-Verlag, Berlin, 2006. (DOI).
25. Time step restrictions using semi-explicit methods for the incompressible Navier-Stokes equations. Wendy Kress and Per Lötstedt. In Computer Methods in Applied Mechanics and Engineering, volume 195, pp 4433-4447, 2006. (DOI).
26. Whole-body T1 mapping improves the definition of adipose tissue: Consequences for automated image analysis. Joel Kullberg, Jan-Erik Angelhed, Lars Lönn, John Brandberg, Håkan Ahlström, Hans Frimmel, and Lars Johansson. In Journal of Magnetic Resonance Imaging, volume 24, pp 394-401, 2006. (DOI).
27. Implicit-explicit Runge-Kutta method for combustion simulation. Erik Lindblad, Damir M. Valiev, Bernhard Müller, Jarmo Rantakokko, Per Lötstedt, and Michael A. Liberman. In Proc. ECCOMAS CFD Conference 2006, p 20, Tech. Univ. Delft, The Netherlands, 2006.
28. Design and usability of a PDE solver framework for curvilinear coordinates. Malin Ljungberg, Kurt Otto, and Michael Thuné. In Advances in Engineering Software, volume 37, pp 814-825, 2006. (DOI).
29. Algorithmic optimizations of a conjugate gradient solver on shared memory architectures. Henrik Löf and Jarmo Rantakokko. In International Journal of Parallel, Emergent and Distributed Systems, volume 21, pp 345-363, 2006. (DOI).
30. Dimensional reduction of the Fokker-Planck equation for stochastic chemical reactions. Per Lötstedt and Lars Ferm. In Multiscale Modeling & simulation, volume 5, pp 593-614, 2006. (DOI).
31. High order finite difference methods for wave propagation in discontinuous media. Ken Mattsson and Jan Nordström. In Journal of Computational Physics, volume 220, pp 249-269, 2006. (DOI).
32. Study of load balancing strategies for finite element computations on heterogeneous clusters. Kalyani Munasinghe and Richard Wait. In Applied Parallel Computing: State of the Art in Scientific Computing, volume 3732 of Lecture Notes in Computer Science, pp 1123-1130, Springer-Verlag, Berlin, 2006. (DOI).
33. A stable hybrid method for hyperbolic problems. Jan Nordström and Jing Gong. In Journal of Computational Physics, volume 212, pp 436-453, 2006. (DOI).
34. Conservative Finite Difference Formulations, Variable Coefficients, Energy Estimates and Artificial Dissipation. Jan Nordström. In Journal of Scientific Computing, volume 29, pp 375-404, 2006. (DOI).
35. OpenMP versus MPI for PDE solvers based on regular sparse numerical operators. Markus Nordén, Sverker Holmgren, and Michael Thuné. In Future Generation Computer Systems, volume 22, pp 194-203, 2006. (DOI).
36. Centerline-based colon segmentation for CAD of CT colonography. Janne Näppi, Hans Frimmel, and Hiroyuki Yoshida. In Medical Imaging 2006: Image Processing, volume 6144 of Proc. SPIE, pp 61445H:1-8, Bellingham, WA, 2006. (DOI).
37. A flexible solver of the Helmholtz equation for layered media. Kurt Otto and Elisabeth Larsson. In Proc. ECCOMAS CFD Conference 2006, p 8, Tech. Univ. Delft, The Netherlands, 2006. (fulltext:postprint).
38. High order accurate solution of flow past a circular cylinder. Erik Stålberg, Arnim Brüger, Per Lötstedt, Arne V. Johansson, and Dan S. Henningson. In Journal of Scientific Computing, volume 27, pp 431-441, 2006. (DOI).
39. On the order of accuracy for difference approximations of initial-boundary value problems. Magnus Svärd and Jan Nordström. In Journal of Computational Physics, volume 218, pp 333-352, 2006. (DOI).
40. Stable artificial dissipation operators for finite volume schemes on unstructured grids. Magnus Svärd, Jing Gong, and Jan Nordström. In Applied Numerical Mathematics, volume 56, pp 1481-1490, 2006. (DOI).
41. A new type of boundary treatment for wave propagation. Anna-Karin Tornberg, Björn Engquist, Bertil Gustafsson, and Per Wahlund. In BIT Numerical Mathematics, volume 46, pp S145-S170, 2006. (DOI).
42. Accelerating the Computation of 3D Gradient Vector Flow Fields. Erik Vidholm, Per Sundqvist, and Ingela Nyström. In Proc, volume 2006:3 of International Conference on Pattern Recognition, pp 677-680, IEEE, 2006. (DOI).
43. Topology optimization of an acoustic horn. Eddie Wadbro and Martin Berggren. In Computer Methods in Applied Mechanics and Engineering, volume 196, pp 420-436, 2006. (DOI).
44. Topology optimization of wave transducers. Eddie Wadbro and Martin Berggren. In Topological Design Optimization of Structures, Machines and Materials: Status and Perspectives, volume 137 of Solid Mechanics and its Applications, pp 301-310, Springer, Dordrecht, The Netherlands, 2006. (DOI).
45. High-order difference methods for waves in discontinuous media. Per Wahlund and Bertil Gustafsson. In Journal of Computational and Applied Mathematics, volume 192, pp 142-147, 2006. (DOI).
46. Multigrid and Gauss-Seidel smoothers revisited: Parallelization on chip multiprocessors. Dan Wallin, Henrik Löf, Erik Hagersten, and Sverker Holmgren. In Proc. 20th ACM International Conference on Supercomputing, pp 145-155, ACM Press, New York, 2006. (DOI).
47. Designing for geometrical symmetry exploitation. André Yamba Yamba, Krister Åhlander, and Malin Ljungberg. In Scientific Programming, volume 14, pp 61-80, 2006. (External link).
48. Eigenvalues for equivariant matrices. Krister Åhlander and Hans Munthe-Kaas. In Journal of Computational and Applied Mathematics, volume 192, pp 89-99, 2006. (DOI).
49. Software design for finite difference schemes based on index notation. Krister Åhlander and Kurt Otto. In Future Generation Computer Systems, volume 22, pp 102-109, 2006. (DOI).

2005

1. Accurate and rapid estimation of adsorption isotherms in liquid chromatography using the inverse method on plateaus. Robert Arnell, Patrik Forssén, and Torgny Fornstedt. In Journal of Chromatography A, volume 1099, pp 167-174, 2005. (DOI).
2. Robust optimal multilevel preconditioners for non-conforming finite element systems. Radim Blaheta, Svetozar Margenov, and Maya Neytcheva. In Numerical Linear Algebra with Applications, volume 12, pp 495-514, 2005. (DOI).
3. Preconditioners based on fundamental solutions. Henrik Brandén and Per Sundqvist. In BIT Numerical Mathematics, volume 45, pp 481-494, 2005. (DOI).
4. High order accurate solution of the incompressible Navier-Stokes equations. Arnim Brüger, Bertil Gustafsson, Per Lötstedt, and Jonas Nilsson. In Journal of Computational Physics, volume 203, pp 49-71, 2005. (DOI).
5. Splitting methods for high order solution of the incompressible Navier-Stokes equations in 3D. Arnim Brüger, Bertil Gustafsson, Per Lötstedt, and Jonas Nilsson. In International Journal for Numerical Methods in Fluids, volume 47, pp 1157-1163, 2005. (DOI).
6. Algebraic preconditioning versus direct solvers for dense linear systems as arising in crack propagation problems. Erik Bängtsson and Maya Neytcheva. In Communications in Numerical Methods in Engineering, volume 21, pp 73-81, 2005. (DOI).
7. Numerical simulations of glacial rebound using preconditioned iterative solution methods. Erik Bängtsson and Maya Neytcheva. In Applications of Mathematics, volume 50, pp 183-201, 2005. (DOI).
8. Novice Java Programmers' Conceptions of "Object" and "Class", and Variation Theory. Anna Eckerdal and Michael Thuné. In SIGCSE Bulletin inroads, volume 37, number 3, pp 89-93, 2005. (DOI).
9. What Does It Take to Learn 'Programming Thinking'?. Anna Eckerdal and Anders Berglund. In Proc. 1st International Computing Education Research Workshop, pp 135-142, ACM Press, New York, 2005. (DOI).
10. On the modeling of small geometric features in computational electromagnetics. Fredrik Edelvik. In Multiscale Methods in Science and Engineering, volume 44 of Lecture Notes in Computational Science and Engineering, pp 133-148, Springer-Verlag, Berlin, 2005. (DOI).
11. Multiscale Methods in Science and Engineering. Björn Engquist, Per Lötstedt, and Olof Runborg (eds). Volume 44 of Lecture Notes in Computational Science and Engineering, Springer-Verlag, Berlin, 2005.
12. Centerline-based colon segmentation for CT colonography. Hans Frimmel, Janne Näppi, and Hiroyuki Yoshida. In Medical physics (Lancaster), volume 32, pp 2665-2672, 2005. (DOI).
13. Time compact high order difference methods for wave propagation, 2D. Bertil Gustafsson and Per Wahlund. In Journal of Scientific Computing, volume 25, pp 195-211, 2005. (DOI).
14. Laplace's equation and the Dirichlet-Neumann map: a new mode for Mikhlin's method. Johan Helsing and Eddie Wadbro. In Journal of Computational Physics, volume 202, pp 391-410, 2005. (DOI).
15. Theoretical and computational aspects of multivariate interpolation with increasingly flat radial basis functions. Elisabeth Larsson and Bengt Fornberg. In Computers and Mathematics with Applications, volume 49, pp 103-130, 2005. (DOI).
16. affinity-on-next-touch: Increasing the Performance of an Industrial PDE Solver on a cc-NUMA System. Henrik Löf and Sverker Holmgren. In Proc. 19th ACM International Conference on Supercomputing, pp 387-392, ACM Press, New York, 2005. (DOI).
17. Load balancing by changing the graph connectivity on heterogeneous clusters. Kalyani Munasinghe and Richard Wait. In Advances in Grid Computing – EGC 2005, volume 3470 of Lecture Notes in Computer Science, pp 1040-1047, Springer-Verlag, Berlin, 2005. (DOI).
18. Strictly stable high order difference approximations for computational aeroacoustics. Bernhard Müller and Stefan Johansson. In Comptes rendus. Mecanique, volume 333, pp 699-705, 2005. (DOI).
19. Towards High Order Numerical Simulation of Aeolian Tones. Bernhard Müller. In Proceedings in Applied Mathematics and Mechanics: PAMM, volume 5, number 1, pp 473-474, 2005. (DOI).
20. Multipole solution of electromagnetic scattering problems with many, parameter dependent incident waves. Martin Nilsson and Per Lötstedt. In Multiscale Methods in Science and Engineering, volume 44 of Lecture Notes in Computational Science and Engineering, pp 195-203, Springer-Verlag, Berlin, 2005. (DOI).
21. Rapid solution of parameter-dependent linear systems for electromagnetic problems in the frequency domain. Martin Nilsson. In IEEE Transactions on Antennas and Propagation, volume 53, pp 777-784, 2005. (DOI).
22. A stable and efficient hybrid method for aeroacoustic sound generation and propagation. Jan Nordström and Jing Gong. In Comptes rendus. Mecanique, volume 333, pp 713-718, 2005. (DOI).
23. Well-posed boundary conditions for the Navier-Stokes equations. Jan Nordström and Magnus Svärd. In SIAM Journal on Numerical Analysis, volume 43, pp 1231-1255, 2005. (DOI).
24. Region-based supine-prone correspondence for the reduction of false-positive CAD polyp candidates in CT colonography. Janne Näppi, Akihiko Okamura, Hans Frimmel, Abraham Dachman, and Hiroyuki Yoshida. In Academic Radiology, volume 12, pp 695-707, 2005. (DOI).
25. Virtual endoscopic visualization of the colon by shape-scale signatures. Janne Näppi, Hans Frimmel, and Hiroyuki Yoshida. In IEEE transactions on information technology in biomedicine, volume 9, pp 120-131, 2005. (DOI).
26. Option pricing using radial basis functions. Ulrika Pettersson, Elisabeth Larsson, Gunnar Marcusson, and Jonas Persson. In Proc. ECCOMAS Thematic Conference on Meshless Methods, pp C24.1-6, Departamento de Matemática, Instituto Superior Técnico, Lisboa, Portugal, 2005.
27. A Dynamic MPI-OpenMP Model for Structured Adaptive Mesh Refinement. Jarmo Rantakokko. In Parallel Processing Letters, volume 15, pp 37-47, 2005.
28. Sparse matrix storage revisited. Malik Silva and Richard Wait. In Computing Frontiers: 2005, pp 230-235, ACM Press, New York, 2005. (DOI).
29. Steady-State Computations Using Summation-by-Parts Operators. Magnus Svärd, Ken Mattsson, and Jan Nordström. In Journal of Scientific Computing, volume 24, pp 79-95, 2005. (DOI).
30. Students designing software: a multi-national, multi-institutional study. Josh Tenenberg, Sally Fincher, Ken Blaha, Dennis Bouvier, Tzu-Yi Chen, Donald Chinn, Stephen Cooper, Anna Eckerdal, Hubert Johnson, Robert McCartney, Alvaro Monge, Jan Erik Moström, Marian Petre, Kris Powers, Mark Ratcliffe, Anthony Robins, Dean Sanders, Leslie Schwartzman, Beth Simon, Carol Stoker, Allison Elliott Tew, and Tammy VanDeGrift. In Informatics in Education. An International Journal, volume 4, pp 143-162, 2005.
31. Fourth order symmetric finite difference schemes for the acoustic wave equation. Abraham Zemui. In BIT Numerical Mathematics, volume 45, pp 627-651, 2005. (DOI).
32. Applications of the generalized Fourier transform in numerical linear algebra. Krister Åhlander and Hans Munthe-Kaas. In BIT Numerical Mathematics, volume 45, pp 819-850, 2005. (DOI).
33. Mesh generation for symmetrical geometries. Krister Åhlander. In Computational Science and its Applications, volume 3480 of Lecture Notes in Computer Science, pp 657-668, Springer-Verlag, Berlin, 2005. (DOI).
34. Sorting out the relationships between pairs of iterators, values, and references. Krister Åhlander. In Generative Programming and Component Engineering, volume 3676 of Lecture Notes in Computer Science, pp 342-356, Springer-Verlag, Berlin, 2005. (DOI).

2004

1. Approximations of very weak solutions to boundary-value problems. Martin Berggren. In SIAM Journal on Numerical Analysis, volume 42, pp 860-877, 2004. (DOI).
2. Uniform estimate of the constant in the strengthened CBS inequality for anisotropic non-conforming FEM systems. Radim Blaheta, Svetozar Margenov, and Maya Neytcheva. In Numerical Linear Algebra with Applications, volume 11, pp 309-326, 2004. (DOI).
3. An algorithm for computing fundamental solutions of difference operators. Henrik Brandén and Per Sundqvist. In Numerical Algorithms, volume 36, pp 331-343, 2004. (DOI).
4. Accurate and stable grid interfaces for finite volume methods. Lars Ferm and Per Lötstedt. In Applied Numerical Mathematics, volume 49, pp 207-224, 2004. (DOI).
5. Some observations regarding interpolants in the limit of flat radial basis functions. Bengt Fornberg, Grady Wright, and Elisabeth Larsson. In Computers and Mathematics with Applications, volume 47, pp 37-55, 2004. (DOI).
6. Fast and robust computation of colon centerline in CT colonography. Hans Frimmel, Janne Näppi, and Hiroyuki Yoshida. In Medical physics (Lancaster), volume 31, pp 3046-3056, 2004. (DOI).
7. Time Compact Difference Methods for Wave Propagation in Discontinuous Media. Bertil Gustafsson and Per Wahlund. In SIAM Journal on Scientific Computing, volume 26, pp 272-293, 2004. (DOI).
8. Time Compact High Order Difference Methods for Wave Propagation. Bertil Gustafsson and Eva Mossberg. In SIAM Journal on Scientific Computing, volume 26, pp 259-271, 2004. (DOI).
9. Adaptive iteration to steady state of flow problems. Karl Hörnell and Per Lötstedt. In Journal of Scientific Computing, volume 20, pp 331-354, 2004. (DOI).
10. Characterization of a hybrid and dynamic partitioner for SAMR applications. Henrik Johansson and Johan Steensland. In Proc. Parallel and Distributed Computing and Systems: 2004, pp 713-718, ACTA Press, Calgary, Canada, 2004.
11. Validation of the Accuracy of the Perturbation Peak Method for Determination of Multicomponent Adsorption Isotherm Parameters in LC. Johan Lindholm, Patrik Forssén, and Torgny Fornstedt. In Analytical Chemistry, volume 76, pp 5472-5478, 2004. (DOI).
12. Validation of the Accuracy of the Perturbation Peak Method for Determination of Single and Binary Adsorption Isotherm Parameters in LC. Johan Lindholm, Patrik Forssén, and Torgny Fornstedt. In Analytical Chemistry, volume 76, pp 4856-4865, 2004. (DOI).
13. Simultaneous search for multiple QTL using the global optimization algorithm DIRECT. Kajsa Ljungberg, Sverker Holmgren, and Örjan Carlborg. In Bioinformatics, volume 20, pp 1887-1895, 2004. (DOI).
14. Generic programming aspects of symmetry exploiting numerical software. Malin Ljungberg and Krister Åhlander. In Proc. ECCOMAS Congress 2004, p 20, Jyväskylä, Finland, 2004. (Fulltext).
15. Improving Geographical Locality of Data for Shared Memory Implementations of PDE Solvers. Henrik Löf, Markus Nordén, and Sverker Holmgren. In Computational Science – ICCS 2004, volume 3037 of Lecture Notes in Computer Science, pp 9-16, Springer-Verlag, Berlin, 2004. (DOI).
16. A minimal residual interpolation method for linear equations with multiple right-hand sides. Per Lötstedt and Martin Nilsson. In SIAM Journal on Scientific Computing, volume 25, pp 2126-2144, 2004. (DOI).
17. Preconditioned implicit solution of linear hyperbolic equations with adaptivity. Per Lötstedt, Alison Ramage, Lina von Sydow, and Stefan Söderberg. In Journal of Computational and Applied Mathematics, volume 170, pp 269-289, 2004. (DOI).
18. Stable and Accurate Artificial Dissipation. Ken Mattsson, Magnus Svärd, and Jan Nordström. In Journal of Scientific Computing, volume 21, pp 57-79, 2004. (DOI).
19. Summation by parts operators for finite difference approximations of second derivatives. Ken Mattsson and Jan Nordström. In Journal of Computational Physics, volume 199, pp 503-540, 2004. (DOI).
20. Strictly Stable High Order Difference Approximations for Low Mach Number Computational Aeroacoustics. Bernhard Müller and Stefan Johansson. In Proc. ECCOMAS Congress 2004, p 19, Jyväskylä, Finland, 2004. (Fulltext).
21. Stability of the High Frequency Fast Multipole Method for Helmholtz’ Equation in Three Dimensions. Martin Nilsson. In BIT Numerical Mathematics, volume 44, pp 773-791, 2004. (DOI).
22. A new high-performance CAD scheme for the detection of polyps in CT colonography. Janne Näppi, Hans Frimmel, Abraham Dachman, and Hiroyuki Yoshida. In Medical Imaging 2004: Image Processing, volume 5370 of Proc. SPIE, pp 839-848, Bellingham, WA, 2004. (DOI).
23. Region-based supine-prone correspondence for reduction of false positives in CAD of CT colonography. Janne Näppi, Hans Frimmel, Akihiko Okamura, Abraham H. Dachman, and Hiroyuki Yoshida. In CARS 2004 – Computer Assisted Radiology and Surgery, volume 1268 of International Congress Series, pp 993-998, Elsevier, 2004. (DOI).
24. Algorithm visualization through animation and role plays. Jarmo Rantakokko. In Proc. Third Program Visualization Workshop, volume 407 of Research Report, pp 76-81, Dept. of Computer Science, University of Warwick, 2004.
25. Comparison of parallelization models for structured adaptive mesh refinement. Jarmo Rantakokko. In Euro-Par 2004: Parallel Processing, volume 3149 of Lecture Notes in Computer Science, pp 615-623, Springer-Verlag, Berlin, 2004. (DOI).
26. Experimental Proof of a Chromatographic Paradox: Are the injected molecules in the peak?. Jörgen Samuelsson, Patrik Forssén, Morgan Stefansson, and Torgny Fornstedt. In Analytical Chemistry, volume 76, pp 953-958, 2004. (DOI).
27. Semi-Toeplitz preconditioning for the linearized Navier-Stokes equations. Samuel Sundberg and Lina von Sydow. In BIT Numerical Mathematics, volume 44, pp 307-341, 2004. (DOI).
28. On Coordinate Transformations for Summation-by-Parts Operators. Magnus Svärd. In Journal of Scientific Computing, volume 20, pp 29-42, 2004. (DOI).
29. Stability of finite volume approximations for the Laplacian operator on quadrilateral and triangular grids. Magnus Svärd and Jan Nordström. In Applied Numerical Mathematics, volume 51, pp 101-125, 2004. (DOI).
30. Cache memory behavior of advanced PDE solvers. Dan Wallin, Henrik Johansson, and Sverker Holmgren. In Parallel Computing: Software Technology, Algorithms, Architectures and Applications, volume 13 of Advances in Parallel Computing, pp 475-482, Elsevier, Amsterdam, The Netherlands, 2004.

2003

1. Discrete adjoint-based shape optimization for an edge-based finite-volume solver. Olivier Amoignon and Martin Berggren. In Computational Fluid and Solid Mechanics: 2003, pp 2190-2193, Elsevier Science, 2003. (DOI).
2. Preconditioning methods for linear systems arising in constrained optimization problems. Owe Axelsson and Maya Neytcheva. In Numerical Linear Algebra with Applications, volume 10, pp 3-31, 2003. (DOI).
3. Robust preconditioners for saddle point problems. Owe Axelsson and Maya Neytcheva. In Numerical Methods and Applications, volume 2542 of Lecture Notes in Computer Science, pp 158-166, Springer-Verlag, Berlin, 2003. (DOI).
4. Multifrequency shape optimization of an acoustic horn. Martin Berggren, Erik Bängtsson, and Daniel Noreland. In Computational Fluid and Solid Mechanics: 2003, pp 2204-2207, Elsevier Science, 2003. (DOI).
5. Convergence acceleration for the steady-state Euler equations. Henrik Brandén and Sverker Holmgren. In Computers & Fluids, volume 32, pp 1075-1092, 2003. (DOI).
6. Shape optimization of an acoustic horn. Erik Bängtsson, Daniel Noreland, and Martin Berggren. In Computer Methods in Applied Mechanics and Engineering, volume 192, pp 1533-1571, 2003. (DOI).
7. A New Technique for Accurate and Stable Modeling of Arbitrarily Oriented Thin Wires in the FDTD Method. Fredrik Edelvik. In IEEE transactions on electromagnetic compatibility (Print), volume 45, pp 416-423, 2003. (DOI).
8. An Unconditionally Stable Subcell Model for Arbitrarily Oriented Thin Wires in the FETD Method. Fredrik Edelvik, Gunnar Ledfelt, Per Lötstedt, and Douglas J. Riley. In IEEE Transactions on Antennas and Propagation, volume 51, pp 1797-1805, 2003. (DOI).
9. Frequency Dispersive Materials for 3-D Hybrid Solvers in Time Domain. Fredrik Edelvik and Bo Strand. In IEEE Transactions on Antennas and Propagation, volume 51, pp 1199-1205, 2003. (DOI).
10. Iterative solution of a hybrid method for Maxwell's equations in the frequency domain. Johan Edlund, Per Lötstedt, and Bo Strand. In International Journal for Numerical Methods in Engineering, volume 56, pp 1755-1770, 2003. (DOI).
11. Problems of high dimension in molecular biology. Johan Elf, Per Lötstedt, and Paul Sjöberg. In Proc. 19th GAMM Seminar Leipzig on High-dimensional problems: Numerical treatment and applications, pp 21-30, Max Planck Institute for Mathematics in the Sciences, Leipzig, Germany, 2003.
12. Fast, accurate, and stable algorithm for the stress field around a zig-zag-shaped crack. Jonas Englund. In Engineering Fracture Mechanics, volume 70, pp 355-364, 2003. (DOI).
13. Anisotropic grid adaptation for Navier-Stokes' equations. Lars Ferm and Per Lötstedt. In Journal of Computational Physics, volume 190, pp 22-41, 2003. (DOI).
14. Theoretical and experimental study of binary perturbation peaks with focus on peculiar retention behaviour and vanishing peaks in chiral liquid chromatography. Patrik Forssén, Johan Lindholm, and Torgny Fornstedt. In Journal of Chromatography A, volume 991, pp 31-45, 2003. (DOI).
15. A fourth order difference method for the incompressible Navier-Stokes equations. Bertil Gustafsson, Per Lötstedt, and Anders Göran. In Numerical Simulations of Incompressible Flows, pp 263-276, World Scientific Publishing, River Edge, NJ, 2003.
16. Analysis of extrapolation boundary conditions for the linearized Euler equations. Thomas Hagstrom and Jan Nordström. In Applied Numerical Mathematics, volume 44, pp 95-108, 2003. (DOI).
17. The Swedish National Graduate School in Scientific Computing (NGSSC). Sverker Holmgren and Anders Ynnerman. In Future Generation Computer Systems, volume 19, pp 1275-1283, 2003. (DOI).
18. Boundary conditions and estimates for the linearized Navier-Stokes equations on staggered grids. Wendy Kress and Jonas Nilsson. In Computers & Fluids, volume 32, pp 1093-1112, 2003. (DOI).
19. A numerical study of some radial basis function based solution methods for elliptic PDEs. Elisabeth Larsson and Bengt Fornberg. In Computers and Mathematics with Applications, volume 46, pp 891-902, 2003. (DOI).
20. Helmholtz and parabolic equation solutions to a benchmark problem in ocean acoustics. Elisabeth Larsson and Leif Abrahamsson. In Journal of the Acoustical Society of America, volume 113, pp 2446-2454, 2003. (DOI).
21. Parallel solution of the Helmholtz equation in a multilayer domain. Elisabeth Larsson and Sverker Holmgren. In BIT Numerical Mathematics, volume 43, pp 387-411, 2003. (DOI).
22. THROOM — Supporting POSIX Multithreaded Binaries on a Cluster. Henrik Löf, Zoran Radovi?, and Erik Hagersten. In Euro-Par 2003: Parallel Processing, volume 2790 of Lecture Notes in Computer Science, pp 760-769, Springer-Verlag, Berlin, 2003. (DOI).
23. Accuracy requirements for transient aerodynamics. Ken Mattsson, Magnus Svärd, Mark Carpenter, and Jan Nordström. In Proc. 16th AIAA CFD Conference, volume 2003-3689 of Conference Proceeding Series, AIAA, 2003.
24. Boundary Procedures for Summation-by-Parts Operators. Ken Mattsson. In Journal of Scientific Computing, volume 18, pp 133-153, 2003. (DOI).
25. High-Order Numerical Simulation of Rocket Launch Noise. Bernhard Müller and Johan Westerlund. In Mathematical and Numerical Aspects of Wave Propagation: WAVES 2003, pp 95-100, Springer-Verlag, Berlin, 2003.
26. Strictly Stable High Order Difference Approximations for the Euler Equations. Bernhard Müller and Stefan Johansson. In Proc. 10th International Congress on Sound and Vibration, pp 3883-3890, Royal Institute of Technology, Stockholm, Sweden, 2003.
27. Evaluating the educational impact of visualization. Thomas Naps, Guido Rößling, Jay Anderson, Stephen Cooper, Wanda Dann, Rudolf Fleischer, Boris Koldehofe, Ari Korhonen, Marja Kuittinen, Charles Leska, Lauri Malmi, Myles McNally, Jarmo Rantakokko, and Rockford J. Ross. In SIGCSE Bulletin inroads, volume 35, number 4, pp 124-136, 2003. (DOI).
28. High order difference method on staggered, curvilinear grids for the incompressible Navier-Stokes equations. Jonas Nilsson, Bertil Gustafsson, Per Lötstedt, and Arnim Brüger. In Computational Fluid and Solid Mechanics: 2003, pp 1057-1061, Elsevier Science, 2003. (DOI).
29. The minimum residual interpolation method applied to multiple scattering in MM-PO. Martin Nilsson. In Proc, volume 2003:3 of Antennas and Propagation Society International Symposium, pp 828-831, IEEE, 2003. (DOI).
30. Finite volume methods, unstructured meshes and strict stability for hyperbolic problems. Jan Nordström, Karl Forsberg, Carl Adamsson, and Peter Eliasson. In Applied Numerical Mathematics, volume 45, pp 453-473, 2003. (DOI).
31. High Order Finite Difference Approximations of Electromagnetic Wave Propagation Close to Material Discontinuities. Jan Nordström and Rikard Gustafsson. In Journal of Scientific Computing, volume 18, pp 215-234, 2003. (DOI).
32. Cache aware data laying for the Gauss-Seidel smoother. Malik Silva. In Electronic Transactions on Numerical Analysis, volume 15, pp 66-77, 2003.
33. Supporting tensor symmetries in EinSum. Krister Åhlander. In Computers and Mathematics with Applications, volume 45, pp 789-803, 2003. (DOI).

2002

1. Hybrid time domain solvers for the Maxwell equations in 2D. Erik Abenius, Ulf Andersson, Fredrik Edelvik, Lasse Eriksson, and Gunnar Ledfelt. In International Journal for Numerical Methods in Engineering, volume 53, pp 2185-2199, 2002. (DOI).
2. A Compact Higher Order Finite Difference Method for the Incompressible Navier-Stokes Equations. Arnim Brüger, Jonas Nilsson, and Wendy Kress. In Journal of Scientific Computing, volume 17, pp 551-560, 2002. (DOI).
3. A comparison of time-domain hybrid solvers for complex scattering problems. Fredrik Edelvik and Gunnar Ledfelt. In International journal of numerical modelling, volume 15, pp 475-487, 2002. (DOI).
4. Outflow boundary conditions for the Fourier transformed two-dimensional Vlasov equation. Bengt Eliasson. In Journal of Computational Physics, volume 181, pp 98-125, 2002. (DOI).
5. Adaptive error control for steady state solutions of inviscid flow. Lars Ferm and Per Lötstedt. In SIAM Journal on Scientific Computing, volume 23, pp 1777-1798, 2002. (DOI).
6. On numerical errors in the boundary conditions of the Euler equations. Lars Ferm and Per Lötstedt. In Applied Mathematics and Computation, volume 128, pp 129-140, 2002. (DOI).
7. Deferred correction in space and time. Bertil Gustafsson and Lina Hemmingsson-Frändén. In Journal of Scientific Computing, volume 17, pp 541-550, 2002. (DOI).
8. Fourth order methods for the Stokes and Navier-Stokes equations on staggered grids. Bertil Gustafsson and Jonas Nilsson. In Frontiers of Computational Fluid Dynamics: 2002, pp 165-179, World Scientific Publishing, River Edge, NJ, 2002.
9. Performance of PDE solvers on a self-optimizing NUMA architecture. Sverker Holmgren, Markus Nordén, Jarmo Rantakokko, and Dan Wallin. In Parallel Algorithms and Applications, volume 17, pp 285-299, 2002. (DOI).
10. Cross correlation functions <em>C_nm</em>(<em>E</em>) via Lanczos algorithms without diagonalization. Hans O. Karlsson and Sverker Holmgren. In Journal of Chemical Physics, volume 117, pp 9116-9123, 2002. (DOI).
11. Deferred Correction Methods for Initial Boundary Value Problems. Wendy Kress and Bertil Gustafsson. In Journal of Scientific Computing, volume 17, pp 241-251, 2002. (DOI).
12. Efficient algorithms for quantitative trait loci mapping problems. Kajsa Ljungberg, Sverker Holmgren, and Örjan Carlborg. In Journal of Computational Biology, volume 9, pp 793-804, 2002. (DOI).
13. Implicit solution of hyperbolic equations with space-time adaptivity. Per Lötstedt, Stefan Söderberg, Alison Ramage, and Lina Hemmingsson-Frändén. In BIT Numerical Mathematics, volume 42, pp 134-158, 2002. (DOI).
14. Load balancing in scientific computing on clusters. Kalyani Munasinghe and Richard Wait. In Proc. Int. Workshop on Grid and Cooperative Computing, pp 281-288, Publishing House of Electronics Industry, Beijing, China, 2002.
15. Entropy Splitting for High Order Numerical Simulation of Vortex Sound at Low Mach Numbers. Bernhard Müller and Helen C. Yee. In Journal of Scientific Computing, volume 17, pp 181-190, 2002. (DOI).
16. High order numerical simulation of sound generated by the Kirchhoff vortex. Bernhard Müller and Helen C. Yee. In Computing and Visualization in Science, volume 4, pp 197-204, 2002. (DOI).
17. A Numerical Method for Acoustic Waves in Horns. Daniel Noreland. In Acta Acoustica united with Acustica, volume 88, pp 576-586, 2002.
18. Parallelization of an unstructured finite volume solver for the Maxwell equations. Jarmo Rantakokko and Fredrik Edelvik. In Parallel Computing: Advances and Current Issues, pp 213-221, Imperial College Press, London, 2002.
19. Go for both types of cache locality!. Malik Silva and Richard Wait. In Proc, volume 2002:2 of HPC Asia, pp 500-503, Tata McGraw-Hill, New Delhi, India, 2002.
20. An application-centric characterization of domain-based SFC partitioners for parallel SAMR. Johan Steensland, Sumir Chandra, and Manish Parashar. In IEEE Transactions on Parallel and Distributed Systems, volume 13, pp 1275-1289, 2002. (DOI).
21. Increasing resolution and forecast length with a parallel ocean model. Tomas Wilhelmsson, Josef Schüle, Jarmo Rantakokko, and Lennart Funkquist. In Operational Oceanography: Implementation at the European and Regional Scales, volume 66 of Elsevier Oceanography Series, pp 77-85, Elsevier Science, Amsterdam, The Netherlands, 2002.
22. Einstein summation for multidimensional arrays. Krister Åhlander. In Computers and Mathematics with Applications, volume 44, pp 1007-1017, 2002. (DOI).
23. On object-oriented frameworks and coordinate free formulations of PDEs. Krister Åhlander, Magne Haveraaen, and Hans Munthe-Kaas. In Engineering with Computers, volume 18, pp 286-294, 2002. (DOI).

2001

1. Efficiency of a hybrid method for the wave equation. Larisa Beilina, Klas Samuelsson, and Krister Åhlander. In Finite Element Methods: Three-dimensional problems, volume 15 of GAKUTO Internat. Ser. Math. Sci. Appl., pp 9-21, Gakkotosho, Tokyo, 2001.
2. Linear wave dispersion laws in unmagnetized relativistic plasma: Analytical and numerical results. Jan Bergman and Bengt Eliasson. In Physics of Plasmas, volume 8, pp 1482-1492, 2001. (DOI).
3. Outflow boundary conditions for the Fourier transformed one-dimensional Vlasov–Poisson system. Bengt Eliasson. In Journal of Scientific Computing, volume 16, pp 1-28, 2001. (DOI).
4. Efficiency in the adaptive solution of inviscid compressible flow problems. Lars Ferm and Per Lötstedt. In Nonlinear Analysis, volume 47, pp 3467-3478, 2001. (DOI).
5. Error control in the solution of flow problems. Lars Ferm, Per Lötstedt, and Stefan Söderberg. In Computational Fluid Dynamics Journal, volume 9, number 1, pp 506-514, 2001.
6. Deferred Correction Methods for Initial Value Problems. Bertil Gustafsson and Wendy Kress. In BIT Numerical Mathematics, volume 41, pp 986-995, 2001. (DOI).
7. High order methods and domain decomposition. Bertil Gustafsson and Lina Hemmingsson-Frändén. In Absorbing Boundaries and Layers, Domain Decomposition Methods: Applications to Large Scale Computers, pp 341-347, Nova Science Publishers, Huntington, NY, 2001.
8. The Godunov–Ryabenkii condition: The beginning of a new stability theory. Bertil Gustafsson. In Godunov Methods: Theory and Applications, pp 425-443, Kluwer/Plenum, New York, 2001.
9. A nearly optimal preconditioner for the Navier-Stokes equations. Lina Hemmingsson-Frändén and Andrew Wathen. In Numerical Linear Algebra with Applications, volume 8, pp 229-243, 2001. (DOI).
10. Performance of high-accuracy PDE solvers on a self-optimizing NUMA architecture. Sverker Holmgren and Dan Wallin. In Euro-Par 2001: Parallel Processing, volume 2150 of Lecture Notes in Computer Science, pp 602-610, Springer-Verlag, Berlin, 2001. (DOI).
11. Time step selection for shock problems. Karl Hörnell and Per Lötstedt. In Communications in Numerical Methods in Engineering, volume 17, pp 477-484, 2001. (DOI).
12. Elimination of first order errors in shock calculations. Gunilla Kreiss, Gunilla Efraimsson, and Jan Nordström. In SIAM Journal on Numerical Analysis, volume 38, pp 1986-1998, 2001. (DOI).
13. Asymptotic behavior of hyperbolic boundary value problems with relaxation term. Wendy Kress. In Hyperbolic Problems: Theory, Numerics, Applications, volume 141 of Internat. Ser. Numer. Math., pp 633-642, Birkhäuser, Basel, Switzerland, 2001.
14. Three-dimensional variational data assimilation for a limited area model, Part II: Observation handling and assimilation experiments. Magnus Lindskog, Nils Gustafsson, Beatriz Navascués, Kristian S. Mogensen, Xiang-Yu Huang, Xiaohua Yang, Ulf Andræ, Loïk Berre, Sigurdur Thorsteinsson, and Jarmo Rantakokko. In Tellus. Series A, Dynamic meteorology and oceanography, volume 53, pp 447-468, 2001. (DOI).
15. Mixed C₊₊/Fortran 90 implementation of parallel flow solvers. Malin Ljungberg and Michael Thuné. In Parallel Computational Fluid Dynamics: Trends and Applications, pp 233-240, Elsevier Science, Amsterdam, The Netherlands, 2001. (DOI).
16. Parametric identification of viscoelastic materials from time and frequency domain data. Magnus Mossberg, Lars Hillström, and Leif Abrahamsson. In Inverse Problems in Engineering, volume 9, pp 645-670, 2001. (DOI).
17. High Order Difference Method for Low Mach Number Aeroacoustics. Bernhard Müller. In Proc. ECCOMAS CFD Conference 2001, p 20, The Institute of Mathematics and its Applications, Southend-on-Sea, UK, 2001.
18. Improving the reliability of low Mach number flow computations. Bernhard Müller and Patrick Jenny. In Computational Fluid Dynamics Journal, volume 9, number 1, pp 515-528, 2001.
19. Finite volume approximations and strict stability for hyperbolic problems. Jan Nordström and Martin Björck. In Applied Numerical Mathematics, volume 38, pp 237-255, 2001. (DOI).
20. High-order finite difference methods, multidimensional linear problems, and curvilinear coordinates. Jan Nordström and Mark H. Carpenter. In Journal of Computational Physics, volume 173, pp 149-174, 2001. (DOI).
21. Model problems and the analysis of boundary procedures in CFD. Jan Nordström. In Absorbing Boundaries and Layers, Domain Decomposition Methods: Applications to Large Scale Computers, pp 109-117, Nova Science Publishers, Huntington, NY, 2001.
22. Sound Emission of Rotor Induced Deformations of Generator Casings. Wolfgang Polifke, Bernhard Müller, and Helen C. Yee. In Proc. 7th AIAA/CEAS Aeroacoustics Conference, volume 2001-2274 of Conference Proceeding Series, AIAA, 2001.
23. A local refinement algorithm for data partitioning. Jarmo Rantakokko. In Applied Parallel Computing: New Paradigms for HPC in Industry and Academia, volume 1947 of Lecture Notes in Computer Science, pp 140-148, Springer-Verlag, Berlin, 2001. (DOI).
24. A comparison of partitioning schemes for blockwise parallel SAMR algorithms. Johan Steensland, Stefan Söderberg, and Michael Thuné. In Applied Parallel Computing: New Paradigms for HPC in Industry and Academia, volume 1947 of Lecture Notes in Computer Science, pp 160-169, Springer-Verlag, Berlin, 2001. (DOI).
25. Object-oriented modeling of parallel PDE solvers. Michael Thuné, Krister Åhlander, Malin Ljungberg, Markus Nordén, Kurt Otto, and Jarmo Rantakokko. In The Architecture of Scientific Software, pp 159-174, Kluwer Academic Publishers, Norwell, MA, 2001.
26. Optimal parameter values for a parallel structured adaptive mesh refinement algorithm. Michael Thuné and Stefan Söderberg. In Applied Parallel Computing: New Paradigms for HPC in Industry and Academia, volume 1947 of Lecture Notes in Computer Science, pp 177-186, Springer-Verlag, Berlin, 2001. (DOI).
27. Discrete element models of particle flows. Richard Wait. In Mathematical Modelling and Analysis, volume 6, pp 156-164, 2001.
28. On the role of mathematical abstractions for scientific computing. Krister Åhlander, Magne Haveraaen, and Hans Z. Munthe-Kaas. In The Architecture of Scientific Software, pp 145-158, Kluwer Academic Publishers, Norwell, MA, 2001.

2000

1. On error bounds of finite difference approximations to partial differential equations: Temporal behavior and rate of convergence. Saul Abarbanel, Adi Ditkowski, and Bertil Gustafsson. In Journal of Scientific Computing, volume 15, pp 79-116, 2000. (DOI).
2. Inverse Electromagnetic Scattering Using the Finite-Difference Time-Domain Method. Erik Abenius, Bo Strand, and Stephane Alestra. In Proc. Millennium Conference on Antennas and Propagation, p 4, ESA Publications, Noordwijk, The Netherlands, 2000.
3. Explicit Hybrid Time Domain Solver for the Maxwell Equations in 3D. Fredrik Edelvik and Gunnar Ledfelt. In Journal of Scientific Computing, volume 15, pp 61-78, 2000. (DOI).
4. Hybrid FV-FD Solver for the Maxwell Equations. Fredrik Edelvik, Ulf Andersson, and Gunnar Ledfelt. In Proc. Millennium Conference on Antennas and Propagation, p 4, ESA Publications, Noordwijk, The Netherlands, 2000.
5. An investigation of hybrid techniques for scattering problems on disjunct geometries. Johan Edlund, Stefan Hagdahl, and Bo Strand. In Proc. Millennium Conference on Antennas and Propagation, p 4, ESA Publications, Noordwijk, The Netherlands, 2000.
6. On the Direct Fourier Method for Computer Tomography. David Gottlieb, Bertil Gustafsson, and Patrik Forssén. In IEEE Transactions on Medical Imaging, volume 19, pp 223-232, 2000. (DOI).
7. Boundary Conditions and Estimates for the Steady Stokes Equations on Staggered Grids. Bertil Gustafsson and Jonas Nilsson. In Journal of Scientific Computing, volume 15, pp 29-59, 2000. (DOI).
8. Implicit high-order difference methods and domain decomposition for hyperbolic problems. Bertil Gustafsson and Lina Hemmingsson-Frändén. In Applied Numerical Mathematics, volume 33, pp 493-500, 2000. (DOI).
9. Convergence acceleration for the linearized Navier-Stokes equations using semicirculant approximations. Sverker Holmgren, Henrik Brandén, and Erik Sterner. In SIAM Journal on Scientific Computing, volume 21, pp 1524-1550, 2000. (DOI).
10. Numerical approaches to optimal control of a model equation for shear flow instabilities. Markus Högberg and Martin Berggren. In Flow Turbulence and Combustion, volume 65, pp 299-320, 2000. (DOI).
11. Convergence analysis of iterative methods by pseudodifference operators. Per Lötstedt. In Journal of Computational and Applied Mathematics, volume 115, pp 397-417, 2000. (DOI).
12. A fast multipole accelerated block quasi minimum residual method for solving scattering from perfectly conducting bodies. Martin Nilsson. In Proc, volume 2000:4 of Antennas and Propagation Society International Symposium, pp 1848-1851, IEEE, 2000. (DOI).
13. An integrated decomposition and partitioning approach for irregular block-structured applications. Jarmo Rantakokko. In Parallel and Distributed Processing, volume 1800 of Lecture Notes in Computer Science, pp 485-496, Springer-Verlag, Berlin, 2000. (DOI).
14. Partitioning strategies for structured multiblock grids. Jarmo Rantakokko. In Parallel Computing, volume 26, pp 1661-1680, 2000. (DOI).
15. Numerical solution of the reduced Navier-Stokes equations for internal incompressible flows. Martin Scholtysik, Bernhard Müller, and Torstein K. Fanneløp. In AIAA Journal, volume 38, pp 1603-1614, 2000.
16. Characterization of domain-based partitioners for parallel SAMR applications. Johan Steensland, Michael Thuné, Sumir Chandra, and Manish Parashar. In Proc. Parallel and Distributed Computing and Systems: 2000, pp 425-430, ACTA Press, Calgary, Canada, 2000.
17. Global artificial boundary conditions for computation of external flows with jets. Semyon Tsynkov, Saul Abarbanel, Jan Nordström, Victor Ryaben'kii, and Veer Vatsa. In AIAA Journal, volume 38, pp 2014-2022, 2000.

1999

1. Optimal disturbances and bypass transition in boundary layers. Paul Andersson, Martin Berggren, and Dan S. Henningson. In Physics of fluids, volume 11, pp 134-150, 1999. (DOI).
2. The volume discharge approach to geometric conservation. Martin Berggren. In Computational Methods for Fluid-Structure Interaction, pp 133-141, Tapir Publishers, Trondheim, Norway, 1999.
3. Convergence acceleration for hyperbolic systems using semicirculant approximations. Henrik Brandén and Sverker Holmgren. In Journal of Scientific Computing, volume 14, pp 357-393, 1999. (DOI).
4. A stable and conservative interface treatment of arbitrary spatial accuracy. Mark H. Carpenter, Jan Nordström, and David Gottlieb. In Journal of Computational Physics, volume 148, pp 341-365, 1999. (DOI).
5. Analysis of a finite volume solver for Maxwell's equations. Fredrik Edelvik. In Finite Volumes for Complex Applications II: Problems and Perspectives, pp 141-148, Hermes Science Publications, Paris, 1999.
6. Blockwise adaptive grids with multigrid acceleration for compressible flow. Lars Ferm and Per Lötstedt. In AIAA Journal, volume 37, pp 121-123, 1999.
7. A fast domain decomposition high order Poisson solver. Bertil Gustafsson and Lina Hemmingsson-Frändén. In Journal of Scientific Computing, volume 14, pp 223-243, 1999. (DOI).
8. Solving hyperbolic PDEs using interpolating wavelets. Mats Holmström. In SIAM Journal on Scientific Computing, volume 21, pp 405-420, 1999. (DOI).
9. Convergence acceleration for computing steady-state compressible flow at low Mach numbers. Patrick Jenny and Bernhard Müller. In Computers & Fluids, volume 28, pp 951-972, 1999. (DOI).
10. Convergence acceleration for the Euler equations using a parallel semi-Toeplitz preconditioner. Andreas Kähäri and Samuel Sundberg. In Euro-Par'99: Parallel Processing, volume 1685 of Lecture Notes in Computer Science, pp 1124-1127, Springer-Verlag, Berlin, 1999. (DOI).
11. A domain decomposition method for the Helmholtz equation in a multilayer domain. Elisabeth Larsson. In SIAM Journal on Scientific Computing, volume 20, pp 1713-1731, 1999. (DOI).
12. Parallel solution of hyperbolic PDEs with space-time adaptivity. Per Lötstedt and Stefan Söderberg. In Finite Volumes for Complex Applications II: Problems and Perspectives, pp 769-776, Hermes Science Publications, Paris, 1999.
13. Boundary and interface conditions for high-order finite-difference methods applied to the Euler and Navier-Stokes equations. Jan Nordström and Mark H. Carpenter. In Journal of Computational Physics, volume 148, pp 621-645, 1999. (DOI).
14. The fringe region technique and the Fourier method used in the direct numerical simulation of spatially evolving viscous flows. Jan Nordström, Niklas Nordin, and Dan Henningson. In SIAM Journal on Scientific Computing, volume 20, pp 1365-1393, 1999. (DOI).
15. Iterative solution of the Helmholtz equation by a fourth-order method. Kurt Otto. In suppl, volume 40:1 of Bollettino di Geofisica Teorica ed Applicata, pp 104-105, OGS, Trieste, Italy, 1999.
16. Iterative solution of the Helmholtz equation by a second-order method. Kurt Otto and Elisabeth Larsson. In SIAM Journal on Matrix Analysis and Applications, volume 21, pp 209-229, 1999. (DOI).
17. On the cancellation problem in calculating compressible low Mach number flows. Jörn Sesterhenn, Bernhard Müller, and Hans Thomann. In Journal of Computational Physics, volume 151, pp 597-615, 1999. (DOI).
18. Simulations of acoustic wave phenomena using high-order finite difference approximations. Bo Strand. In SIAM Journal on Scientific Computing, volume 20, pp 1585-1604, 1999. (DOI).
19. Filter bank methods for hyperbolic PDEs. Johan Waldén. In SIAM Journal on Numerical Analysis, volume 36, pp 1183-1233, 1999. (DOI).
20. Filter banks, ?-cycles and hyperbolic PDE. Johan Waldén. In Numerical Treatment of Multiscale Problems, volume 70 of Notes Numer. Fluid Mech., pp 168-179, Vieweg, Braunschweig, Germany, 1999.
21. On the approximation of singular source terms in differential equations. Johan Waldén. In Numerical Methods for Partial Differential Equations, volume 15, pp 503-520, 1999. (DOI).